Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O09
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25740.1 68415.m03089 ATP-dependent protease La (LON) domain-...    56   2e-08
At5g53940.1 68418.m06711 yippee family protein similar to mdgl-1...    29   2.7  
At3g45450.1 68416.m04908 Clp amino terminal domain-containing pr...    29   2.7  

>At2g25740.1 68415.m03089 ATP-dependent protease La (LON)
           domain-containing protein low similarity to protease Lon
           [Pseudomonas fluorescens] GI:7644385; contains Pfam
           profile PF02190: ATP-dependent protease La (LON) domain
          Length = 547

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 358 VNPFGVKFDIVTLEKAKCENV-GPPQGADSWFPGYTWRICACPHCGQHLGWTFESTDLSL 534
           VNP G   +I+T  KA    + G P   DSWFPGY W I  C  C   LGW F +T+  L
Sbjct: 470 VNPHGYVHEIMTFYKANDIALRGRPVKKDSWFPGYAWTIANCATCETQLGWHFTATNKKL 529


>At5g53940.1 68418.m06711 yippee family protein similar to mdgl-1
           [Mus musculus] GI:10441648, Yippee protein [Drosophila
           melanogaster] GI:5713279; contains Pfam profile PF03226:
           Yippee putative zinc-binding protein
          Length = 129

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 472 CACPHCGQHLGWTFESTDLSLTKAKE 549
           C C  CGQ++GW +ES      K KE
Sbjct: 72  CCC--CGQNVGWKYESAHEKAQKYKE 95


>At3g45450.1 68416.m04908 Clp amino terminal domain-containing
           protein contains Pfam profile: PF02861 Clp amino
           terminal domain
          Length = 341

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 519 RLKRPAKVLATMRTCTYTPCVAGKPGI 439
           ++KR  ++LA  RTC    C+ GKPG+
Sbjct: 162 QIKRVVQILAR-RTCRNNACLIGKPGV 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,373,790
Number of Sequences: 28952
Number of extensions: 280084
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)