Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_O06
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 33 0.027
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 31 0.14
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 29 0.58
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 28 1.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 28 1.3
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 3.1
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 3.1
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 4.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.5
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 33.5 bits (73), Expect = 0.027
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 356 EWAEQLDLSHNKLNNVTNELNTLSNLKVLKLDXNNMNNIP 475
E E LD+S NK+ + L NLKVL + N + +P
Sbjct: 98 ESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELP 137
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 31.1 bits (67), Expect = 0.14
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -2
Query: 338 TPNSSLNNRHINA--DRRILMGKSKFPPESMN*GTSSLL 228
+PN SL N +++A D+ GKSKFPP S T+S +
Sbjct: 391 SPNKSLVNDNVSAKHDKESENGKSKFPPPSQTLVTTSTI 429
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 284 LECACLHLYVDCSKKNLVSVPKIPEWAEQLDLSHNKLNNV 403
+E +H+Y+D + + P++PE + + LSH+ L ++
Sbjct: 18 IELDGIHIYIDPGSDDSLKHPEVPEQPDLILLSHSDLAHI 57
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +2
Query: 305 LYVDCSKKNLVSVPKIPEWAEQ----LDLSHNKLNNVTNELNTLSNLKVLKLDXNNM 463
LY+ CS L S+PK + Q LDLS N+L + L L L L L N +
Sbjct: 335 LYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 326 KNLVSVPKIPEWAEQLDLSHNKLNNVTNEL 415
+ LV + ++PEW+ Q L+ LN + + L
Sbjct: 498 ERLVKIKELPEWSHQAFLNTQSLNRIQSHL 527
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 311 VDCSKKNLVSVPKIPEWAEQLDLSHNKLNNVTNELNTLSNLKVLKLDXNNMNNIP 475
VD K S + +W LDL L NV+ +L S L L ++ NN+ +P
Sbjct: 144 VDDQKSKSDSKKERRDWT-CLDLGGIGLRNVSTDLFKFSFLTELYINHNNLTRLP 197
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Frame = +2
Query: 191 STKMGDSRLLLFITMSLFLSSSTLGEIYFCPLEC-----ACLHLYVDCSKKNLVSVPKIP 355
S++ S F +MS+ + L IYF LEC + + + +D K +
Sbjct: 493 SSRRSSSAANPFQSMSITEFAEMLTNIYFSSLECLRRIRSQIKVLIDILSKKDTKQYHLS 552
Query: 356 EWAEQLDLSHNKLNNVTNELNTLSNLKVLKLDXNNMNNI 472
DL + VT ++ T++NL+ LD NN+
Sbjct: 553 VILN--DLMATSSDVVTQQVTTINNLRFRVLDTYPPNNV 589
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 263 GEIYFCPLECACLHLYVDCSKKNLVSVPKI-PEWAEQLDLSHNKLNNVTNELNTLSNLKV 439
G ++ E H + SK+ + +V + P+W ++ + K N T NLKV
Sbjct: 1086 GVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQVSKTKKNLKV 1145
Query: 440 LKL 448
L L
Sbjct: 1146 LPL 1148
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 356 QEFLAQTPNSSLNNRHINADRRILMGKSKF 267
+ FL Q N+ ++ HIN +L+ KSK+
Sbjct: 59 ENFLWQRVNTEMSLNHINLTCMLLLYKSKY 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,300
Number of Sequences: 5004
Number of extensions: 51104
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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