Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O04
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.2  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   6.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.7  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 198  VALGGTARRPVLGGSGSESKMLVWPPAGGAEQ 103
            V L GTA  P  G SG  S     PP  G E+
Sbjct: 1104 VPLKGTAVPPPSGSSGPGSTGSKSPPVAGFEE 1135


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 187 TKRNEHFQPRTRR*AESDQRH 249
           T+RN +++PRT R     ++H
Sbjct: 227 TRRNPYYRPRTSRTEPPRRKH 247


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 145 IEDVSVATSRGGGATLLDRRAPSLRP 68
           ++DV  + + GGGA L +     +RP
Sbjct: 116 VKDVWQSATSGGGANLTNSLTGPVRP 141


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 5/11 (45%), Positives = 6/11 (54%)
 Frame = -1

Query: 190  WWNGTAPGPRW 158
            WW+ T   P W
Sbjct: 1042 WWSSTTTSPWW 1052


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,548
Number of Sequences: 336
Number of extensions: 2635
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)