Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_O04
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.007
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 29 0.43
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 27 3.1
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 27 3.1
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.3
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 5.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/66 (30%), Positives = 24/66 (36%)
Frame = +2
Query: 83 SSSIKQGCSAPPAGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVAT 262
S+S S PP G T P T + PP ST S G P + TS T
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTT 341
Query: 263 NGQSTP 280
+ P
Sbjct: 342 STSIPP 347
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/66 (30%), Positives = 24/66 (36%)
Frame = +2
Query: 83 SSSIKQGCSAPPAGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVAT 262
S+S S PP G T P T + PP ST S G P + TS T
Sbjct: 336 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTT 395
Query: 263 NGQSTP 280
+ P
Sbjct: 396 STSIPP 401
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 29.5 bits (63), Expect = 0.43
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 60 FNVGLNDGARLSSRVAPPPRLVATLTSSIPNRSHRGPGAVPFHQAQR 200
+ + L A LSS+ + P+L + L +S RS R A PF QR
Sbjct: 162 WEIELAQPAALSSQSSLSPKLSSVLPTSTQKRSVRSNNAKPFESYQR 208
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 449 PHPLAVSLYNQIFDFHLTHIMSQICIXAKFFLRY 550
P+ ++S+YNQI D + I + +FLRY
Sbjct: 45 PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 185 PPSATSTFSHGQGDEPKATNGTSVA-TNGQST 277
PP++TS S+G G P+ G+S NG T
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 114 PRLVATLTSSIPNRSHRGPGAVPFHQ-AQRALSATDK 221
P+ +A TS+IPN GP P Q AQ A ++ K
Sbjct: 18 PKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSK 54
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = +2
Query: 86 SSIKQGCSAPPAGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 247
S++ GC+ PP+ N F + P + R AT S P + G
Sbjct: 278 SNVAHGCTHPPSLNQLNKFHLDASPRQARPRRSVSLATGLNSPSVSKPPSSATG 331
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 105 APPPRLVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEMSR 233
APPP L A+ S+PN R H R + S+
Sbjct: 1730 APPPPLPASSAPSVPNPGDRSALLQQIHTGTRLKKTVTTDKSK 1772
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 113 PPAGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 280
PP +N S P PP+ GR A PP + + G +P + + +N + P
Sbjct: 339 PPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPP 392
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 80 RSSSIKQGCSAPPAGGHTNIFDS--EPEPPRTGRRAVPPSATST 205
R+SS+ PP T + P PP+ G PP+A+ T
Sbjct: 900 RTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGT 943
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,080
Number of Sequences: 5004
Number of extensions: 41978
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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