Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O04
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)                       29   3.2  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             29   3.2  
SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)               28   5.7  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +2

Query: 44  NDFNTIQRWPQ*RSSSIKQGCSAPPAGGHTNIFDSEPEPPRTGRRAVPPSATST 205
           N++ TI +     S    Q   A P    TN  DS P   +   R  PP  TST
Sbjct: 283 NEYETITKQEILESQEFAQA-PATPRSATTNPEDSSPGNRKAANRETPPPGTST 335


>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
          Length = 188

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 185 PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 280
           PPS++S      G+    TNG S   NG++TP
Sbjct: 103 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 134


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 185 PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 280
           PPS++S      G+    TNG S   NG++TP
Sbjct: 775 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 806


>SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 116 PAGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 280
           P+ G T  ++  P  P  G   VPP+  +  S+G       +NGT+V TNG + P
Sbjct: 120 PSNGTTVPYNG-PTVPSNGA-TVPPNGATVPSNGT---TVPSNGTTVPTNGTTVP 169


>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
          Length = 754

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 116 PAGGHTNIFDSEPEPPRTGRRAVPPSAT 199
           P+      F  E EPP+  R+  PPS T
Sbjct: 322 PSNARRRFFGFETEPPQASRQCSPPSRT 349


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 107  SAPPAGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 247
            + PP+GG      +   P   G   VP +AT     G    P AT+G
Sbjct: 927  ATPPSGGGNETAPTATPPSGVGNETVP-TATPPSGSGNETAPTATSG 972


>SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 116 PAGGHTNIFDSEPEPPRTGRR-AVPPSATSTFSHGQGDEPKATNGTSVATNGQST 277
           P+  H    D  P  P   R   +PP + +T   G   E  AT G  ++++   T
Sbjct: 134 PSDSHATRDDGMPPDPHATRDDGMPPDSHATRDDGMPSESHATRGDGMSSDSHVT 188


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 104  CSAPPAGGHT-NIFDSEPEPPRTGRRAVPPSATSTF 208
            C    +G  T  + + EP PPRT  R+ PPS +S +
Sbjct: 2006 CLKKRSGDRTVYVREREPLPPRTKMRSRPPSMSSIY 2041


>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 501 LTLCHKYVSXLSFS*GTLPVALLKFCNCDQRCSQQXXCVS 620
           + L  ++V  ++ S  +LPV L   C+C +R S    C++
Sbjct: 229 IRLAQEFVDKITASADSLPVPLRSLCHCLKRTSTIIKCLT 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,510,453
Number of Sequences: 59808
Number of extensions: 353293
Number of successful extensions: 1274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)