Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_O04
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48150.2 68418.m05948 phytochrome A signal transduction 1 (PA...    28   4.6  
At5g48150.1 68418.m05947 phytochrome A signal transduction 1 (PA...    28   4.6  
At2g25970.1 68415.m03117 KH domain-containing protein                  28   4.6  
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea...    28   6.1  
At5g54290.1 68418.m06762 cytochrome c biogenesis protein family ...    27   8.1  
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-...    27   8.1  

>At5g48150.2 68418.m05948 phytochrome A signal transduction 1 (PAT1)
          Length = 490

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 169 GPRWLRF-GIEDVSVATSRGGGATLLDRRAPSLRPTLN 59
           GP  +R  GI+D++ A +RGGG +++  R   L    N
Sbjct: 254 GPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFN 291


>At5g48150.1 68418.m05947 phytochrome A signal transduction 1 (PAT1)
          Length = 490

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 169 GPRWLRF-GIEDVSVATSRGGGATLLDRRAPSLRPTLN 59
           GP  +R  GI+D++ A +RGGG +++  R   L    N
Sbjct: 254 GPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFN 291


>At2g25970.1 68415.m03117 KH domain-containing protein 
          Length = 632

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/80 (22%), Positives = 33/80 (41%)
 Frame = +2

Query: 41  QNDFNTIQRWPQ*RSSSIKQGCSAPPAGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQ 220
           Q  + T  + P  + S+ + G  APP       + S+P          PP A+   ++GQ
Sbjct: 485 QAGYGTTGQQPPAQGSTGQAGYGAPPTSQAG--YSSQPAAAYNSGYGAPPPASKPPTYGQ 542

Query: 221 GDEPKATNGTSVATNGQSTP 280
             +     G+  + +G + P
Sbjct: 543 SQQSPGAPGSYGSQSGYAQP 562


>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
           family protein contains similarity to cockayne syndrome
           complementation group A protein GB:U28413 GI:975301 from
           [Homo sapiens]; confirmed by cDNA gi:1598289
          Length = 450

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 156 SGSESKMLVWPPAGGAEQPCLIDEL 82
           SGS+ ++LVW P G  E   + DE+
Sbjct: 417 SGSDRQILVWSPGGTVEDEMVQDEV 441


>At5g54290.1 68418.m06762 cytochrome c biogenesis protein family low
           similarity to cytochrome c biogenesis protein CcdA
           [Paracoccus pantotrophus] GI:11095328; contains Pfam
           profile PF02683: Cytochrome C biogenesis protein
           transmembrane region
          Length = 354

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 237 AFGSSPC--PWLKVLVALGGTARRPVLGGS 154
           A  +SPC  P L  L+    T+R PV+GGS
Sbjct: 261 ALAASPCSTPVLATLLGYVATSRDPVIGGS 290


>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
           / HD-ZIP transcription factor 13 identical to homeobox
           gene 13 protein (GP:12325190) [Arabidopsis thaliana]
          Length = 294

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 83  SSSIKQGCSAPPAGGHTNIFDSEPEPPRT-GRRAVPPS-ATST 205
           S +++   S  P    + +    P PP+T GR   PPS AT+T
Sbjct: 204 SDNLRLDISTAPPSNDSTLTGGHPPPPQTVGRHFFPPSPATAT 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,898,542
Number of Sequences: 28952
Number of extensions: 251244
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)