Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N24
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   1.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   3.8  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.9  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   8.9  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 347 LAFS*ARLTAAGGKGTESVYCLESSNQHFHQ 255
           L F+ A L AA  K    V C   S  HF Q
Sbjct: 8   LFFAVATLFAAYCKAESKVVCYYDSKSHFRQ 38


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 174 GGYL*AWLDIISASXSPGFWR 112
           GG+L  WL  +     P  WR
Sbjct: 208 GGFLPKWLPPLQGFSDPSAWR 228


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 193 EVITGSRWVLVGMVG 149
           + IT   W L+GM G
Sbjct: 170 DFITNGEWYLIGMPG 184


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 193 EVITGSRWVLVGMVG 149
           + IT   W L+GM G
Sbjct: 170 DFITNGEWYLIGMPG 184


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 193 EVITGSRWVLVGMVG 149
           + IT   W L+GM G
Sbjct: 170 DFITNGEWYLIGMPG 184


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 193 EVITGSRWVLVGMVG 149
           + IT   W L+GM G
Sbjct: 170 DFITNGEWYLIGMPG 184


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 193 EVITGSRWVLVGMVG 149
           + IT   W L+GM G
Sbjct: 170 DFITNGEWYLIGMPG 184


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 293 PTPFPYPPPQSNEPTKT 343
           P P P P PQ  + T++
Sbjct: 393 PEPVPTPEPQPTQTTES 409


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,643
Number of Sequences: 336
Number of extensions: 3131
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)