Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N24
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    27   1.8  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   3.1  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   3.1  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   5.5  

>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 320 QSNEPTKTLKSLXNIRKESLRFIRCPEPLSKLXDNQIGD 436
           +S+EPT T+K   N RK++ + IR  E L+K     I D
Sbjct: 135 ESSEPTPTIKQQFNDRKKNAQ-IREREALAKREQEMIED 172


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 305 PYPPPQSNEPTKTLKSLXNIRKESLRFIRCPEPLSKLXDNQIGDGVMKSPESNGK 469
           PY PP +NE   +  S    R  S+  +  P P S +    +   V  SP  N K
Sbjct: 254 PYSPP-ANETPASSSSSAKARPVSVPDMSSPVPASSVEYESLKAAVTYSPSQNPK 307


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 239 PEAYLFGENADLNFLGSRPTPFPYPPP-QSNEPT 337
           P+A    E+A++    SRPTP P PP   +N PT
Sbjct: 62  PQAATVSESANV----SRPTPAPVPPAGNTNTPT 91


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 467 KGTYYNIEFTFDCDARCAITVHYFC 541
           KG YY +E+ F   +   + VH FC
Sbjct: 367 KGCYYGLEYLFKDRSLPKVHVHCFC 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,367
Number of Sequences: 5004
Number of extensions: 48691
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)