Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N24
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)              166   2e-41
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score =  166 bits (403), Expect = 2e-41
 Identities = 79/182 (43%), Positives = 110/182 (60%)
 Frame = +2

Query: 95  MGVLXSRQNPGLXDADIISNHAYKYPPRSGNYFGSHFIMGGERFDTPQPEAYLFGENADL 274
           MG L S ++ G+ D D   + +Y+YPP SG YF  +FIMGG +F + QPE+YLFGEN+DL
Sbjct: 1   MGGLLSNRSDGVDDVDHNGSSSYRYPPASGPYFADYFIMGGSKFSSTQPESYLFGENSDL 60

Query: 275 NFLGSRPTPFPYPPPQSNEPTKTLKSLXNIRKESLRFIRCPEPLSKLXDNQIGDGVMKSP 454
           N+L  +P PFPYP P  NEPTKTL SL N+RK+SLR +RC +P  ++             
Sbjct: 61  NYLSPKPVPFPYPSPHGNEPTKTLCSLVNLRKDSLRLVRCTDPSDEIT------------ 108

Query: 455 ESNGKGTYYNIEFTFDCDARCAITVHYFCTEEVTPAGVVYYPRDPTMSSQTYHYKKGANQ 634
                   Y+IEF FD D +C++ ++Y   E+ +    +Y  ++  MSS  + Y KGA Q
Sbjct: 109 --------YHIEFLFDADVKCSVMIYYQAMEDSSSGLALYTSKEAGMSSPKFSYPKGAGQ 160

Query: 635 QF 640
            F
Sbjct: 161 LF 162


>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 284 GSRPTPFPYPPPQSNEPTK 340
           G+RPTP P PP +  +PTK
Sbjct: 801 GARPTPPPPPPGKPTKPTK 819


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,030
Number of Sequences: 59808
Number of extensions: 384002
Number of successful extensions: 1000
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)