Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N21
         (381 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   3.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   3.1  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   5.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    20   7.3  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    20   9.6  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 192 QVKRNVPTATTVIAPSA 142
           QVKRNVP  T    P A
Sbjct: 201 QVKRNVPKPTVPKIPPA 217


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 192 QVKRNVPTATTVIAPSA 142
           QVKRNVP  T    P A
Sbjct: 201 QVKRNVPKPTVPKIPPA 217


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 179 FLFTWWQEREVPPPHG 226
           FL T    +EVPPP G
Sbjct: 10  FLPTVLPHQEVPPPFG 25


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 295 FANKIIFPLXYVXXLXSPI 239
           FA  I+F L +   L SPI
Sbjct: 136 FAGLIVFILFFAQGLTSPI 154


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 192 QVKRNVPTAT 163
           QVKRNVP  T
Sbjct: 201 QVKRNVPKPT 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,266
Number of Sequences: 336
Number of extensions: 1498
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7908675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)