Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N21
         (381 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr...    27   5.6  
At5g45680.1 68418.m05616 FK506-binding protein 1 (FKBP13) identi...    26   7.4  
At5g28910.1 68418.m03564 expressed protein                             26   9.7  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    26   9.7  
At1g63810.1 68414.m07221 nucleolar RNA-associated family protein...    26   9.7  
At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin...    26   9.7  

>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 625

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 113 GSNTSAANAIALGAMTVVAVGTFLFTWWQERE 208
           G   + A  +A GA  + A     F WW+ R+
Sbjct: 235 GITGAIAGGVAAGAALLFAAPAIAFAWWRRRK 266


>At5g45680.1 68418.m05616 FK506-binding protein 1 (FKBP13) identical
           to Probable FKBP-type peptidyl-prolyl cis-trans
           isomerase 3, chloroplast precursor (Ppiase) (Rotamase)
           (SP:Q9SCY2) / FK506 binding protein 1 (GI:21535744)
           [Arabidopsis thaliana]; contains Pfam PF00254:
           peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 208

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 40  TTHCRFSVATNKLPFCD 90
           TT C FSV+ + L FCD
Sbjct: 81  TTSCEFSVSPSGLAFCD 97


>At5g28910.1 68418.m03564 expressed protein
          Length = 408

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 162 LWRSEHFSLLGGKKGRFPHRTELKARIGEXSXXTXCSGKIILF 290
           +WR+ HF L GG +  +P    ++  I        C  K + F
Sbjct: 24  VWRTGHFLLGGGDEENYPLTRRVQRDIWIHQHPLDCGNKSLKF 66


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 88  DDQEF*FA-GQQHIRC*CYSTRRDDGCGGRNISLYLVARKGGSPTARSSRRES 243
           DD EF  A   +++R   Y +RRD     R  S      +G SP+   SR  S
Sbjct: 175 DDTEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRS 227


>At1g63810.1 68414.m07221 nucleolar RNA-associated family protein /
           Nrap family protein contains Pfam profile PF03813: Nrap
           protein; similar to nucleolar RNA-associated protein
           alpha (GI:18539461) [Mus musculus]
          Length = 1053

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 168 RSEHFSLLGGKKGRFP 215
           RS+H S++ G +GRFP
Sbjct: 726 RSQHASMINGLQGRFP 741


>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
           2 (SERK2) nearly identical to somatic embryogenesis
           receptor-like kinase 2 [Arabidopsis thaliana]
           GI:14573457; contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain; identical to
           cDNA somatic embryogenesis receptor-like kinase 2
           (SERK2) GI:14573456
          Length = 628

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 131 ANAIALGAMTVVAVGTFLFTWWQERE 208
           A  +A GA  + A     F WW+ R+
Sbjct: 244 AGGVAAGAALLFAAPALAFAWWRRRK 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,411,324
Number of Sequences: 28952
Number of extensions: 129795
Number of successful extensions: 333
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)