Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N19
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   1.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   5.5  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   5.5  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    24   9.5  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 53  NKLPFCDDQEF*FAGQQHIRC--*CYSTRRD 139
           N  PFC D  +    QQH +C   C  +R+D
Sbjct: 148 NSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 166 RNVPTATTVIAPSAIALAADVLLPC 92
           R+VP   +++ P+A++    +L PC
Sbjct: 176 RSVPCDNSILGPAALSREPTILQPC 200


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 32  CRFSVATNKLPFCDDQEF*FAGQQHIRC*CYST 130
           CR S+ TN+LP C  + + + G    +  C  T
Sbjct: 134 CRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKT 166


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 199 GGTSLSCHQVKRNVPTATTVIAPSAIALAADVLLPC 92
           GGT   C Q    +P    V AP  ++      LPC
Sbjct: 111 GGTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPC 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,474
Number of Sequences: 5004
Number of extensions: 22686
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)