Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N18
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)                  33   0.20 
SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)                   31   0.82 
SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8)               31   0.82 
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               29   1.9  
SB_50485| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_11349| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)           28   5.8  
SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)          28   5.8  
SB_8895| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)
          Length = 1150

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 210 AVLIRATPSRVQSRLLTA-EAPGAPANTQPAERAFTAKTSSVTLTKYAS 353
           A L+R TP   QSR +T  EA GA   T  A+ A +++ S VT  ++A+
Sbjct: 790 AQLVRTTPFNTQSRAVTIHEATGARITT--AQEALSSRDSGVTSPRFAT 836


>SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)
          Length = 591

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 21/85 (24%), Positives = 34/85 (40%)
 Frame = +3

Query: 81  WVCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRATPSRVQSRLLT 260
           W+C  ++ +  T + L+ A+    C   A   +R       +          +      T
Sbjct: 209 WMCHCFIAIRDTGERLSHAV---GCAFTAC-LQRKQKAQALQQQAKAAKEGEKTDGTQAT 264

Query: 261 AEAPGAPANTQPAERAFTAKTSSVT 335
           + AP   AN Q + RAF +  SSVT
Sbjct: 265 STAPSTVANQQQSSRAFVSTPSSVT 289


>SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8)
          Length = 291

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 260 GGGTGSSSKHATGGTGVYCENVKCNS 337
           GGG+G+ S  A GG G YC    C++
Sbjct: 247 GGGSGTHSGQAGGGGGSYCGGSSCSA 272


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/86 (23%), Positives = 29/86 (33%)
 Frame = +2

Query: 95  LVTFVFYAEAAGTCPLPSKVYGCSPKCKEDYECTHGKVXXXXXXXXXXXXEPAAYGGGTG 274
           L T +    AA  C   S+   C+P C + Y+   G                     GT 
Sbjct: 4   LWTLLLAVMAASFCAKGSRPDKCAPICNKMYQPVCGS-DNVTYSNPCMLRSATCKSNGTI 62

Query: 275 SSSKHATGGTGVYCENVKCNSYEICK 352
           +       G+   CE  KC   ++CK
Sbjct: 63  TMKHRGKCGSSQSCEQKKCKGTKVCK 88


>SB_50485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 145 RKRARASGFGVEDKGNQREHTQAGMSLNP 59
           + R  ++GFG+  KG  +++T  G +LNP
Sbjct: 7   KHRQNSAGFGLVLKGEMKDNTAHGKNLNP 35


>SB_11349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 4/109 (3%)
 Frame = +2

Query: 71  HSCLGVFALVTFVFYAEAAGTCPLPSKVYGCSPKCKEDYECT----HGKVXXXXXXXXXX 238
           + C G F +   +       T P  S + GC   C+ +  C     + K           
Sbjct: 105 YECGGFFEMPNSLLQGHVIETTPAAS-MKGCKEICRRNSSCFSINYNRKRSQCELNGATH 163

Query: 239 XXEPAAYGGGTGSSSKHATGGTGVYCENVKCNSYEICKRDPMTKRMKCS 385
              P  +  GT     HA       C N  C+S+  CK     K   C+
Sbjct: 164 FAFPENFQPGTAPDVHHAVVKPVASCSNNFCSSHLRCKMREGGKAYNCA 212


>SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
          Length = 497

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 76  LLGCVRVGYLCLLRRSRWHVPSS 144
           ++  +R GYLC +RRSR  +P S
Sbjct: 160 MINPIRRGYLCAIRRSREQLPLS 182


>SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)
          Length = 547

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 260 GGGTGSSSKHATGGTGVYCENVKC 331
           GGG+G +   A GG G YC    C
Sbjct: 377 GGGSGITWNQAGGGGGSYCAGSSC 400


>SB_8895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 325 DVFAVNARSAGCVFAGAPGAS-AVSSRL*TRLGVA 224
           DVFAV AR   C+ + A G S    SRL  R  VA
Sbjct: 173 DVFAVVARPNNCIISLADGVSWGTKSRLAARSAVA 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,150
Number of Sequences: 59808
Number of extensions: 253541
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)