Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N18
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37250.1 68415.m04570 adenylate kinase family protein contain...    28   3.6  
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    27   6.2  
At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containi...    27   6.2  
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    27   6.2  

>At2g37250.1 68415.m04570 adenylate kinase family protein contains
           Pfam profile: PF00406 adenylate kinase
          Length = 284

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 304 RSAGCVFAGAPGAS--AVSSRL*TRLGVARIRTADL 203
           R+   VF G PG      +SRL T LGV  I T DL
Sbjct: 50  RNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDL 85


>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 60  GFNDIPAWVCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTA 203
           GF +    +CS+  P+SS P  +    FL   T   ++ ++   +H A
Sbjct: 731 GFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNA 778


>At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 495

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 258 TAEAPGAPANTQPAERAFTAKTSSVT 335
           T+ AP  P N + AER FT +  S++
Sbjct: 8   TSHAPPLPTNRRTAERTFTVRCISIS 33


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 102 PLSSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRA--TPSRVQSRLLTAEAPG 275
           P+  TP  + +   +R C+ A     + T  H  RS  L ++  T ++ +SR  T E   
Sbjct: 290 PVIETPSNVMKTKPMRSCSGAKSMTPKRTTKHARRSLNLEKSAETLTKAESRAATGELRS 349

Query: 276 APAN 287
             AN
Sbjct: 350 KRAN 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,065,386
Number of Sequences: 28952
Number of extensions: 161497
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)