Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N15
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    26   0.31 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    26   0.31 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.94 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.0  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 230 FSGYRRFGGLGTRGRIRTN 174
           F G+  FGGLG RG+  +N
Sbjct: 22  FGGFGGFGGLGGRGKCPSN 40


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 230 FSGYRRFGGLGTRGRIRTN 174
           F G+  FGGLG RG+  +N
Sbjct: 22  FGGFGGFGGLGGRGKCPSN 40


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 1    NQPKLFTNPTYLLITNQPNYYQLITNQIIKLFNIHK 108
            +QP++F N   ++++    Y ++  N+II  F I+K
Sbjct: 1525 SQPEVFVNGEKIVVSRNKAYQKVEENEII--FEIYK 1558


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 257 QETLPSLRLFSGYRRFGGLGTR 192
           Q  LPS    S Y RFG L TR
Sbjct: 260 QSLLPSQTGLSPYLRFGCLSTR 281


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 382 NLRILLKIFIDLT 420
           +LRILLK F+D+T
Sbjct: 813 SLRILLKRFLDIT 825


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 73  TNQIIKLFNIHKHCIK 120
           TN+I ++FN  KH  K
Sbjct: 743 TNRISRIFNASKHSAK 758


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,165
Number of Sequences: 438
Number of extensions: 3086
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)