Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N15
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15060.1 68417.m02314 F-box protein-related contains weak sim...    30   0.97 

>At4g15060.1 68417.m02314 F-box protein-related contains weak
           similarity to F-box domain Pfam:PF00646
          Length = 572

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 121 VLFNSTD*NLKKALCHPRLVRI-LPLVPNPPNLRYPEKSLNDGRVSCDLLPTRILV*CI- 294
           ++FN  + NLK   C     ++ + L+   PNLR  E SLN+G   C + P   L   + 
Sbjct: 46  IVFNQLE-NLKLCPCDSNWSKLFVRLLKYSPNLRELEVSLNEGHTKCCVDPQVSLENQLN 104

Query: 295 LIPYCL 312
            +P CL
Sbjct: 105 FVPECL 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,838
Number of Sequences: 28952
Number of extensions: 216780
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)