Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_N12
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 33 0.047
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 27 1.8
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 1.8
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 26 4.1
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 25 7.2
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 7.2
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 7.2
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 9.5
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 9.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.5
>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 32.7 bits (71), Expect = 0.047
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 56 INSWEFSCLCLVHDCLSKPTTEHDPFRGRGIGSTIWGWITY 178
+ W F C+C + L+ P + P+R RGI T + W+TY
Sbjct: 13 LTKWFFCCVCTI---LTMPFFKK-PYRKRGISRTPYEWLTY 49
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 350 STLQPSSVPIASGLEEVNSTV-EXRPLELEAVLSSTVMGTDNLGSKD 487
+T +PSS+P +E +N TV R + L+S MGT L +D
Sbjct: 441 NTSEPSSIPPQEIIEHINETVIYIRHSLFRSKLTSYFMGTKPLQLRD 487
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 317 STLKPTTTIIISTLQPSSVPIASGLEEVNSTVEXRPLELEAVLSSTVMGTDNLGSKD*QR 496
ST++ + QP+SVP++ E V S ++ LE+E+ + ++GT G QR
Sbjct: 972 STVREALRFSAALRQPASVPLSEKYEYVESVIKL--LEMES-YAEAIIGTPGSGLNVEQR 1028
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 344 IISTLQPSSVPIASGLEEVNSTVEXRPLELEAVLSSTVMGTDN-LGSKD*QRCN*SNSKI 520
IIST SV + L E+ +E + +E EA+ T T N L +K Q+ S S +
Sbjct: 50 IISTEYNYSVDLKKTLNEIIMPIEGQSMEREAIGICTCFKTLNQLHTKLYQQMISSGSPV 109
Query: 521 -SLSRSL 538
SLS+SL
Sbjct: 110 YSLSQSL 116
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 266 IDTSRPTEVNTKPENDLSTLKPTTTII 346
+DT +P +V T+ N +TLK T +
Sbjct: 219 VDTDQPEDVKTQTNNASNTLKHDATAV 245
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 181 RVSYPSPYSRPDPTTPKR 128
+ SY SPY+RP TT +R
Sbjct: 354 KASYISPYARPGITTSRR 371
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 284 TEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEEVNSTVEXRPLELEAVLSSTVMG 463
T++ KP S L PTT+++ + + S L+ NS E+E L S G
Sbjct: 165 TKIKLKPPQ--SPLSPTTSLLARKCKHIDLDTFSRLDHPNSDSSDETFEMEE-LPSLSYG 221
Query: 464 TDNL 475
+++L
Sbjct: 222 SEDL 225
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 111 GLLRQSCTKHKQENSQEFIT 52
GL+ +CT+++ NSQ FIT
Sbjct: 97 GLVGMACTENEGNNSQFFIT 116
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 175 SYPSPYSRPDPTTPKRVMFSRRFA 104
S SPY+ PD T P+ + ++R A
Sbjct: 502 SKDSPYNMPDLTVPEYMRLAKRIA 525
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 202 T*TPPCERVSYPSPYSRPDPTTP 134
T PP ++ S+P+PY+ P +P
Sbjct: 943 TRVPPVQQPSHPNPYTPVAPQSP 965
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,610
Number of Sequences: 5004
Number of extensions: 50097
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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