Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N12
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823...    29   4.2  
04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686...    29   4.2  
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622...    28   5.6  
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136...    28   5.6  
03_06_0122 - 31815023-31816357                                         28   7.4  
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842...    27   9.8  

>09_06_0206 -
           21580240-21580467,21580544-21580591,21581533-21582321,
           21582779-21582979
          Length = 421

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 323 LKPTTTIIISTLQPSSVPIASGLEEV 400
           LKP   +++ST+ PS  P+ SG   +
Sbjct: 176 LKPENVLLVSTINPSKDPVRSGFTPI 201


>04_04_1019 +
           30166514-30166585,30167207-30167841,30168505-30168645,
           30169604-30170300
          Length = 514

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +2

Query: 269 DTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEEVNSTVEXRPLELEAVLS 448
           D S+      + + D +T   TTT    T   S+ P+    EE         LELE V+ 
Sbjct: 355 DKSQQQPSVKEEQKDQATTATTTTTSTITTTNSASPVVVKEEEAALAGSSEALELERVMD 414

Query: 449 STVMG 463
           +T  G
Sbjct: 415 TTAAG 419


>08_01_0704 +
           6219530-6219609,6221595-6222243,6222339-6222437,
           6222521-6222616,6222750-6222848,6222929-6223027,
           6223811-6223882,6224508-6224597,6225173-6227329
          Length = 1146

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 383 SGLEEVNSTVEXRPLELEAVLSSTVMGTDNLGSKD 487
           SGL  +NSTVE   + L    S  + G  N+ S +
Sbjct: 44  SGLVRINSTVESNEVSLSKTRSGLIRGNTNVRSNE 78


>07_03_0336 +
           16911947-16912144,16912636-16912692,16912917-16913696,
           16914666-16914713,16914795-16916032,16916776-16916860,
           16917323-16917379
          Length = 820

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 317 STLKPTTTIIISTLQPSSVPIASGLEEVNSTVEXRP 424
           S LK    ++IST+ PS  PI SGL+      E  P
Sbjct: 192 SDLKLENILLISTIDPSKDPIRSGLKPNLERPEGNP 227


>03_06_0122 - 31815023-31816357
          Length = 444

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 483 LLPKLSVPITVDDKTASNSKGRXSTVELTSSSPLAIGTDEGC 358
           LLP +   + + + + + SKG    ++LTS  P + G   GC
Sbjct: 315 LLPGVDHAVPLAESSIAASKGGKFAIDLTSMQPQSRGGTPGC 356


>01_01_1069 -
           8420454-8420670,8421272-8421447,8421556-8421738,
           8421885-8421980,8422064-8422192,8422266-8422445,
           8422524-8422634,8422714-8422869,8422983-8423078,
           8423160-8423327,8423402-8423642,8423724-8423851,
           8424042-8424134,8424214-8424309,8424431-8424523,
           8424741-8424850,8424999-8425134,8425215-8425315,
           8426029-8426152,8426237-8426411,8426523-8426681,
           8427423-8427536,8427669-8427848,8428926-8429005
          Length = 1113

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +2

Query: 110 PTTEHDPFRGRGIGSTIWGWITYPFTWWSSGEPELAPGSDQLLAIGPDNIIXIDTSRPTE 289
           P T H PF+    G ++ GW+       SS    +   S   L + P+  + I   RPT 
Sbjct: 231 PLTAHTPFQPPPAGPSLAGWMANAAAATSSVPSAVVAASS--LPVPPNQAVPI-MKRPTI 287

Query: 290 V---NTKPENDLSTLKPTTTIIISTLQPSSVP 376
               + + E  +  L+P+   +     P+ +P
Sbjct: 288 TDYQSAESEQLMKRLRPSGHGVDEATYPAPIP 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,055
Number of Sequences: 37544
Number of extensions: 331762
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)