Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N12
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47342| Best HMM Match : VWA (HMM E-Value=0)                         31   1.1  
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)                  29   2.5  
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.3  
SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_37413| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_47342| Best HMM Match : VWA (HMM E-Value=0)
          Length = 483

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +2

Query: 257 IIXIDTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEEVNSTVE 415
           I  I TSRPT ++T      ST + TT    ST+ P+S PI +G+E  +   E
Sbjct: 257 ITTIPTSRPTRLSTP-----STRRKTTRRA-STIPPTSRPITTGVETTSLITE 303


>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
          Length = 827

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -2

Query: 543 KNKDLDKEILEFDQLQRC*SLLPKLSVPITVDDKTASNSKGRXSTVELTSSSPLAIGTDE 364
           K +D DKEI  F   Q    ++ + +     +   A +SK     +E+TSSSPLA     
Sbjct: 496 KKQDNDKEIYNFKDNQL---IIQRKTRQEVQESAFAMDSKELKFNMEITSSSPLASVVAG 552

Query: 363 GCRVDIII-VVVGFNVDR 313
            C V I++  VV + + R
Sbjct: 553 FCVVTILMNCVVCYQIYR 570


>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = +2

Query: 155 TIWGWITYPFTWWSSGEPELAPGSDQLLAIGPDNIIXIDTSRPTEVNTKPENDLSTLKPT 334
           TI   +  PF     G+P L+  +    +      + ++T+  T ++  P   +S++  T
Sbjct: 357 TIAVMLRLPFLRHKIGQPVLSVNATT--SSSTYETVAVNTT--TTISPSPNGTISSVYET 412

Query: 335 TTIIIS-TLQPSSVPIASGLEE---VNSTVEXRPLELEAVLSSTVM 460
             +  + T+ PS     S L E   VNST    P E  AV ++T +
Sbjct: 413 LAVNATPTISPSPNGTTSSLYETIAVNSTTSSSPFETAAVNATTTI 458


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 405  ELTSSSPLAIGTDEGCRV-DIIIVVVGFNVDRSFSGLVLTSVGLDV 271
            E TS+S   +   E  RV D+++ V+  + D   +G V+ S+GLD+
Sbjct: 1887 EFTSASVAHVS--ENSRVGDVVLTVIAVDADEGSNGDVVYSLGLDI 1930


>SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -2

Query: 366 EGCRVDIIIVVVGFNVDRSFSGLVLTSVGLDVSIXIMLSGPIASN*SLPGANSGSPELHH 187
           EG   ++II+V  F + R+F+ L+   + + + I  ++   I S+ SLP ++S S     
Sbjct: 238 EGHSAEVIIMV--FIIIRTFTVLITIFIIIAIIITCIIFTTITSSSSLPASSSSSSSSFF 295

Query: 186 VNG*VIHPHIVD 151
           +     HP   D
Sbjct: 296 LWEVKFHPQKAD 307


>SB_37413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
 Frame = +2

Query: 248 PDNIIXIDTSRPTEVN-------TKPENDLSTLKPTTTIIISTLQPSSVPIASGLEEVNS 406
           PD      T RPT  +       T P N  ++  PTT  I S+L P ++P  +      S
Sbjct: 2   PDTTSLTPTHRPTTSHNITTPHPTTPSNSTNSTMPTTQSIPSSLPPKTMPAPTVKHPTKS 61

Query: 407 T 409
           T
Sbjct: 62  T 62


>SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = -2

Query: 471 LSVPITVDDKTASNSK-GRXSTVELTSSSPLAIGTDEGCRVDIII--VVVGFNVDRSFSG 301
           + V ++VD   + ++K G    V+++    +++  DE   VD+ +   VV   VD S   
Sbjct: 213 VDVDVSVDVNVSVDAKVGVSVDVDVSVDVDVSVDVDESVDVDVDVDESVVDVPVDISVDV 272

Query: 300 LVLTSVGLDVSIXIMLS 250
            V  SV +DVS+ + +S
Sbjct: 273 DVDVSVDVDVSVDVDVS 289


>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 317 STLKPTTTIII---STLQPSSVPIASGLEEVNSTVEXRPLELEAVLSSTVMGTDNLGSK 484
           S L P+ T+ I   S+LQP +  +AS     ++T         A +SST   T  LG +
Sbjct: 275 SRLFPSATVSITPISSLQPPTFTVASSSSSTSATTSNIASSAPAPISSTASTTTLLGQQ 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,256
Number of Sequences: 59808
Number of extensions: 385126
Number of successful extensions: 992
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)