Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_N12
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50590.1 68416.m05533 transducin family protein / WD-40 repea...    29   2.0  
At2g42980.1 68415.m05332 aspartyl protease family protein contai...    29   2.0  
At1g22882.1 68414.m02857 expressed protein                             29   2.7  
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.7  
At2g17530.1 68415.m02028 protein kinase family protein identical...    29   3.5  
At4g35500.2 68417.m05045 protein kinase family protein contains ...    28   6.2  
At4g35500.1 68417.m05044 protein kinase family protein contains ...    28   6.2  
At2g17580.1 68415.m02034 polynucleotide adenylyltransferase fami...    28   6.2  
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa...    28   6.2  
At3g28020.1 68416.m03498 hypothetical protein                          27   8.2  

>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
            family protein contains 3 WD-40 repeats (PF00400); some
            similarity to s-tomosyn isoform (GI:4689231)[Rattus
            norvegicus]; contains non-consensus AT-AC splice sites at
            intron 18
          Length = 1606

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 344  IISTLQPSSVPIASGLEEVNSTVEXRPLELEAVLSSTVMGTDNLGSKD 487
            ++   + S V    GL  +   V  +PL L A  SS++MG ++LG ++
Sbjct: 1061 VVEIKEDSLVSKPGGLSLLGKPVSDKPLALPAGESSSMMGLESLGKQN 1108


>At2g42980.1 68415.m05332 aspartyl protease family protein contains
           pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 527

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 155 STRSHDPETGHVQSSVCLDNRALSTSKRTPKSLLQIMLR 39
           S++ HDP   H + SV   +R    +KRT  S++ + ++
Sbjct: 63  SSKEHDPSKEHTRESVKPQSRIKQETKRTTHSVVDLQIQ 101


>At1g22882.1 68414.m02857 expressed protein
          Length = 660

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 353 TLQPSSVPIASGL---EEVNSTVEXRPLELEAVLSSTVMGTDNLGSKD 487
           +L  +SV + S L   ++VN + E    E EA +SSTV G D + SKD
Sbjct: 81  SLASASVDVTSDLSRNDDVNLSEESEDKEQEAEISSTVSGND-IESKD 127


>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glycosyltransferase family
          Length = 479

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +2

Query: 245 GPDNIIXIDTSRPTEV-NTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEEVNSTVEXR 421
           GP+++  + + R   + +  PE +   ++   T+  ST++    P    L  +N+T +  
Sbjct: 59  GPNSLDGLPSFRFESIPDGLPEENKDVMQDVPTLCESTMKNCLAPFKELLRRINTTKDVP 118

Query: 422 PLEL---EAVLSSTVMGTDNLGSKD 487
           P+     + V+S T+   + LG  D
Sbjct: 119 PVSCIVSDGVMSFTLDAAEELGVPD 143


>At2g17530.1 68415.m02028 protein kinase family protein identical to
           SRPK2 [Arabidopsis thaliana] gi|9843645|emb|CAC03676;
           contains protein kinase domain, Pfam:PF00069
          Length = 440

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 317 STLKPTTTIIISTLQPSSVPIASGLEEV 400
           S LKP   ++ ST+ P+  PI SGL  +
Sbjct: 168 SDLKPENILLCSTIDPAKDPIRSGLTPI 195


>At4g35500.2 68417.m05045 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 439

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 317 STLKPTTTIIISTLQPSSVPIASGL 391
           S LKP   ++ ST+ P+  P+ SGL
Sbjct: 169 SDLKPENILLCSTIDPAKDPVRSGL 193


>At4g35500.1 68417.m05044 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 438

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 317 STLKPTTTIIISTLQPSSVPIASGL 391
           S LKP   ++ ST+ P+  P+ SGL
Sbjct: 168 SDLKPENILLCSTIDPAKDPVRSGL 192


>At2g17580.1 68415.m02034 polynucleotide adenylyltransferase family
           protein similar to SP|P13685 Poly(A) polymerase (EC
           2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 757

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 482 KD*QRCN*SNSKISLSRSLFFNRMDTMIYNYLNGLLEDYATELMNRLI 625
           KD +R   S  +     SLF+N  D  IY+Y NG +ED  T+L  R +
Sbjct: 194 KDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANG-MED-LTDLKLRTL 239


>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q06003 Goliath
           protein (G1 protein) {Drosophila melanogaster}; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 381

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +2

Query: 152 STIWGWITYPFTWWSSGEPELAPGSDQL 235
           S IW W+   F W SSG  ELA GS QL
Sbjct: 194 SFIW-WVI-GFYWVSSGGQELAQGSPQL 219


>At3g28020.1 68416.m03498 hypothetical protein
          Length = 246

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 278 RPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEEVNSTVEXRPLELEAVLSSTV 457
           RP+ V+ +  N   +  PTTTII+        P+   L  V+  +  +  ++  V S  +
Sbjct: 50  RPSLVDIQKINGFGSAIPTTTIIMPLKSDKVKPVKEQLSNVHPEIHYQD-KVSIVNSHGI 108

Query: 458 MGTDNLGSK 484
           +   NL S+
Sbjct: 109 VSETNLVSR 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,937,467
Number of Sequences: 28952
Number of extensions: 266983
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)