Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_N04
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 347 4e-96
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 203 8e-53
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 58 8e-09
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 32 0.47
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05) 29 4.3
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088) 29 4.3
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05) 29 4.3
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.3
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05) 29 4.3
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 347 bits (854), Expect = 4e-96
Identities = 157/201 (78%), Positives = 175/201 (87%)
Frame = +3
Query: 48 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 227
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 228 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 407
V FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++E K
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKT 120
Query: 408 GDRGRLARASGNFATVIGHNPDAXRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 587
GDRGRLAR SGN+ATVI HN + RT VKLPSG KKV+PSSNR +VGIVAGGGRIDKP+L
Sbjct: 121 GDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPML 180
Query: 588 KAGRAYHKYKVKRNCWPYVRG 650
KAGRAYHKYK KRNCWP VRG
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRG 201
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 203 bits (496), Expect = 8e-53
Identities = 90/123 (73%), Positives = 106/123 (86%)
Frame = +3
Query: 174 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVM 353
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60
Query: 354 PVGAMPEGTIVCNLEXKMGDRGRLARASGNFATVIGHNPDAXRTXVKLPSGAKKVLPSSN 533
PVG MPEGTI+ ++E K GDRGRLAR SGN+ATVI HN + RT VKLPSG KKV+PSSN
Sbjct: 61 PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120
Query: 534 RGM 542
R +
Sbjct: 121 RAL 123
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 57.6 bits (133), Expect = 8e-09
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Frame = +3
Query: 168 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYC--GKK---AT 332
IK V + +DP R A +A+V +++L IAP+ + G + GK A
Sbjct: 56 IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111
Query: 333 LEVGNVMPVGAMPEGTIVCNLEXKMGDRGRLARASGNFATVIGHNPDAXRTXVKLPSGAK 512
L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169
Query: 513 KVLPSSNRGMVGIVAGGGRIDKPILKAGR 599
K + S VG V+ R ++ I KAGR
Sbjct: 170 KEVSSKCLASVGRVSNIERKNRVIGKAGR 198
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 562 PPATIPTMPLLLDGRTFLAPDGSFTXVR 479
P AT + L+LD TFL PDGS T ++
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSATEMK 162
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 482 TXSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 309
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 308 KLACVEPFGSNEELLP 261
CV F +++ P
Sbjct: 136 NQRCVS-FNLKKQITP 150
>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
Length = 275
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 626 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 501
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
Length = 321
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 626 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 501
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 144 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 181
>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
Length = 249
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 626 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 501
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 801
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 626 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 501
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 86 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 123
>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
Length = 273
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 626 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 501
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -2
Query: 403 FXSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SPSGAMKSSFLVLNLYGSRKCTT 224
F S L T +P+ P G+TF T +V F +NW + + SG + + ++ + S +
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121
Query: 223 AKG 215
+G
Sbjct: 1122 IRG 1124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,575,186
Number of Sequences: 59808
Number of extensions: 470948
Number of successful extensions: 1112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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