Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L21
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   123   1e-30
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   123   1e-30
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.3  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  123 bits (296), Expect = 1e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +3

Query: 144 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 323
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 324 VRIPKEQGSPFILAW 368
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 83.4 bits (197), Expect = 1e-18
 Identities = 35/41 (85%), Positives = 38/41 (92%)
 Frame = +1

Query: 334 PRSRGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 456
           P+ +G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104



 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +2

Query: 455 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYP 550
           GVDK TQF RYF            TSLCFVYP
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYP 135


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  123 bits (296), Expect = 1e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +3

Query: 144 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 323
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 324 VRIPKEQGSPFILAW 368
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 83.4 bits (197), Expect = 1e-18
 Identities = 35/41 (85%), Positives = 38/41 (92%)
 Frame = +1

Query: 334 PRSRGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 456
           P+ +G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104



 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +2

Query: 455 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYP 550
           GVDK TQF RYF            TSLCFVYP
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYP 135


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 14  LITKLLQISCFKN 52
           +I KLLQI+C+++
Sbjct: 472 IIKKLLQINCYRS 484


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 345 PAPWGCARRRRR 310
           P P GC RRR R
Sbjct: 1   PGPNGCPRRRGR 12


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 69  VIPHPRVPQLPPRHIHLVKIT 131
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 512 HRRPDYQRSNARTASSCQRPPRNTC 438
           H   DY       AS C  P  NTC
Sbjct: 149 HSLSDYN-DKPIPASCCNSPENNTC 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,677
Number of Sequences: 438
Number of extensions: 2651
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)