Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L20
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   3.1  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    25   9.5  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    25   9.5  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +2

Query: 98  FHENIRVNLLKCCYVSCYSFSLQLTQVFQSSSFSYNTK 211
           FH +I + LL+C Y++C S  +++  +  +SS + +++
Sbjct: 681 FHMHINLELLECVYLTC-SMLMEIPAMAAASSTASDSR 717


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 410  STKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLT 541
            +  ++ VC  +  RLG  C++ S      +K LF+C D+D  LT
Sbjct: 953  NNSLNLVCSDTSSRLGIDCFYISQ-----KKLLFSC-DKDRLLT 990


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 640 ARVVYSSDPTTIFXDRFFVKVVSKILILPTSW 545
           A++VY+++    F D FF++V+ K +    +W
Sbjct: 252 AKLVYANEGFRGFLDGFFLRVLRKSISSTITW 283


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 516 QAKSAFCHVASVSLKK*QLCPSRIKEGGHTYDIFV 412
           QA  +FC +   S  +  +CP+R+    + YD FV
Sbjct: 281 QAVESFCTIKFNSCGQVCVCPNRVYVHKNVYDEFV 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,496
Number of Sequences: 5004
Number of extensions: 48575
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)