Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L20
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14919| Best HMM Match : MAM (HMM E-Value=0) 39 0.004
SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086) 38 0.007
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06) 36 0.029
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19) 33 0.27
SB_59211| Best HMM Match : zf-C2H2 (HMM E-Value=4.3) 31 0.82
SB_53066| Best HMM Match : RR_TM4-6 (HMM E-Value=0.68) 31 0.82
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0) 31 0.82
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08) 29 2.5
SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32) 29 4.4
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
>SB_14919| Best HMM Match : MAM (HMM E-Value=0)
Length = 1332
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNL 538
CPP + R+ +SC FF W+ AL C +SN+
Sbjct: 602 CPPGWYRIRNSCLFFQQANFNWESALVRCHGINSNV 637
>SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)
Length = 407
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNL 538
CP F+R SC+F T TW+ A+ C + ++L
Sbjct: 97 CPADFVRNERSCFFHQQTPLTWENAIAQCAQKGASL 132
>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
Length = 583
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 389 GVEAXXNSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTV 544
G E +T + Y C + CY +S E TW + C D+D++L +
Sbjct: 80 GDEVVTATTYLRYKCKQGWYYYNGKCYHYSSFEETWTQGQRYCLDQDADLAI 131
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 35.5 bits (78), Expect = 0.038
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKKSIXKYS 610
C + + G SCY FS + TW A C L ++++ +Y+ K++ K +
Sbjct: 122 CDAGWSQYGASCYKFSTSSKTWLIAQQDCHQSGGYLVKVDNSDEQHFLSYM-MKTVMKQA 180
Query: 611 RWIG 622
WIG
Sbjct: 181 AWIG 184
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 428 VCPPSFIRLGHSCYFFSDTEA---TWQKALFACK 520
+CP +++ SCY F+ +A TW+KA C+
Sbjct: 257 LCPVNWVPYKDSCYHFNTHQAQLVTWEKAYNVCQ 290
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNL-TVPARWEDKNLRNYLNKKSIXKY 607
C + G CY F+ + +W A C+ +L ++ + E ++ + + + +Y
Sbjct: 939 CKTGWKEFGQFCYQFNMEKKSWSAARQQCQANGGDLVSIQSPVEQAHITLEVGQFGVREY 998
Query: 608 SRWIGGIYDSGDKEWK 655
+ WIG +S + W+
Sbjct: 999 A-WIGLHDESVESAWE 1013
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +2
Query: 413 TKMSYVCPPSFIRLGHSCYFFSDTEA----TWQKALFACKDRDSNLTVPARWEDKNLRNY 580
T+ VC ++ G CY+FS+ TW +A C+ +L V R ++N +
Sbjct: 1434 TRPPGVCDAGWVYWGGLCYYFSNATTADLKTWMEARDFCRKSRGDL-VSLRTANENAFVF 1492
Query: 581 LNKKSIXKY-SRWIG 622
K+ Y + WIG
Sbjct: 1493 SEIKTRYYYWTVWIG 1507
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNL 538
CP + + G SCY + W++A C+ + L
Sbjct: 1732 CPSGYSKYGESCYLMYYNKLNWKEAGEVCQKDGAQL 1767
>SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +2
Query: 422 SYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLT-VPARWEDKNLRNYLNKKSI 598
S CP ++RL SCY T W A AC +L + + E+ + K++
Sbjct: 2 SLQCPAGWVRLNRSCYKADQTIMNWADARTACGKLGGDLVKITSEQENTFVYELSRKQAP 61
Query: 599 XKYSRWIG 622
+ WIG
Sbjct: 62 SRNRMWIG 69
>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
Length = 951
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNL 538
CP ++ + SCY F T+ TW A C +S L
Sbjct: 121 CPRGYVEIRGSCYKFHMTKDTWINAFHECTRENSTL 156
>SB_59211| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)
Length = 151
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 559 LPTSWHCKIAISILAGEERFLPRGFSITEEIA-AVSEPDKRRRTHVRHLCAI 407
LPTS H ++ L ++ + RG + T E A A EP K RRT V +C +
Sbjct: 67 LPTSAHLRLKGQNLMEKKGRMLRGDATTREKALAQKEPPKHRRTAVCPICHV 118
>SB_53066| Best HMM Match : RR_TM4-6 (HMM E-Value=0.68)
Length = 411
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 559 LPTSWHCKIAISILAGEERFLPRGFSITEEIA-AVSEPDKRRRTHVRHLCAI 407
LPTS H ++ L ++ + RG + T E A A EP K RRT V +C +
Sbjct: 148 LPTSAHLRLKGQNLMEKKGRMLRGDATTREKALAQKEPPKHRRTAVCPICHV 199
>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 577
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNL-TVPARWEDK-NLRNYLN 586
CP + + G SCY S + W +A CK +L ++ + +E LRN +N
Sbjct: 156 CPRFYSKYGDSCYRMSYIKLPWSEAREVCKKEGGDLVSIHSAFEQAFLLRNMIN 209
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 428 VCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNL 538
VC + G CY F+ + WQ A C++R L
Sbjct: 1514 VCRTGWKEYGQYCYQFNSDKRNWQSARLMCQNRGGEL 1550
>SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 422 SYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTV 544
S C S+ CYF S E W A +C+ R S L +
Sbjct: 56 SSTCDSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTLVI 96
>SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)
Length = 129
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSNLTV 544
C S+ CYF S E W A +C+ R S L +
Sbjct: 2 CDSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTLVI 39
>SB_25470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 473 FSDTEATWQKALFACKDRDSNLTVPARWED---KNLRNYLNKKSIXKYSRWIGGIYDSGD 643
FS + W L K + + + A+W++ KN R +LN + +S++I + D
Sbjct: 307 FSGKQILWADLLARQKTKGTIIRSRAKWQEMGEKNTRYFLNLERRQHHSKYITKLNDDKS 366
Query: 644 KE 649
KE
Sbjct: 367 KE 368
>SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 431 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSN-LTVPARWEDKNLRNYLNKKSIXKY 607
CP + CY + W+ A+ C+++ + LTV E + +R ++ +K++
Sbjct: 254 CPQGWFEAHKVCYGLYHEKMYWRDAMTLCREQGAGLLTVRDANEMEVIRKHIKEKNLF-- 311
Query: 608 SRWIGGIY 631
W+G Y
Sbjct: 312 -FWLGARY 318
>SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)
Length = 773
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = -1
Query: 652 PFLIARVVYSSDPTTIFXDRFFVKVVSKILILPTSWHCKIAISILAGEERFLPRGFSITE 473
P+L+ D R ++ SK L + SW CK+ ++L +++F+ + +
Sbjct: 434 PYLLVECKEDKDSKVANMYRNIMRKFSKAL-MKGSWECKVRRNMLGKQQQFIDHIVRLMK 492
Query: 472 EIAAVSEPDKRR 437
E++ S R+
Sbjct: 493 EVSQFSGNRSRK 504
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 461 SCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKK 592
SCY FS +W + CK R+ +L E + +++NKK
Sbjct: 359 SCYIFSSEGTSWTENREKCKSRNGDL---VSMETEEEWSFINKK 399
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,254,620
Number of Sequences: 59808
Number of extensions: 367968
Number of successful extensions: 818
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -