Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L20
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02700.1 68418.m00208 F-box family protein low similarity to ...    32   0.38 
At3g28410.1 68416.m03549 F-box family protein low similarity to ...    31   0.88 
At1g32240.1 68414.m03966 myb family transcription factor (KAN2) ...    30   1.2  
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    29   2.7  
At1g52310.1 68414.m05902 protein kinase family protein / C-type ...    28   6.2  

>At5g02700.1 68418.m00208 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 456

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 527 DSNLTVPARWEDKNLRNYLNKKSIXKYSRWIGGIYDSGDKEW 652
           D+ L + A + D  LRN    K++ +   W+GGIY +GD  W
Sbjct: 391 DATLKLVASFMDLVLRN---AKTLERMVVWLGGIYFNGDAPW 429


>At3g28410.1 68416.m03549 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 465

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 461 SCYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKKSIXKYSRWIGGIYDSG 640
           +C  F  ++  ++  +  C D  S L   A + +  LRN    K++ +   W+GGIY +G
Sbjct: 382 TCEVFPTSKEIYK--MLGCNDATSKLV--ASFMNLVLRN---AKTLERMVVWLGGIYFNG 434

Query: 641 DKEW 652
           D  W
Sbjct: 435 DAPW 438


>At1g32240.1 68414.m03966 myb family transcription factor (KAN2)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA GARP-like putative
           transcription factor KANADI2 (KAN2)  GI:15723594
          Length = 388

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 191 NSTGKPELTGEKNCNNSRNST*VN*HECFHEKENRSKF 78
           +ST  P LTG  N  N+ + +  N H   H+  NR++F
Sbjct: 164 SSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTLNRARF 201


>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1189

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 74  NQISNGF---LFHENIRVNLLKCCYVSCYSFSLQLTQVFQS 187
           NQ+S+ F   +F ENI+ N  +      YS  LQL Q+F S
Sbjct: 279 NQLSHSFQLSVFMENIKANYTRPTGSDDYSAKLQLQQMFMS 319


>At1g52310.1 68414.m05902 protein kinase family protein / C-type
           lectin domain-containing protein contains protein kinase
           domain, Pfam:PF00069, PF00059 Lectin C-type domain
          Length = 552

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 431 CPPSFIRLGHS---CYFFSDTEATWQKALFACKDRDSNLTVPARWEDKNLRNYLNKKSIX 601
           CPP +I +G +   CY +     +W+K+   C+    +L   A  ++ +    L   ++ 
Sbjct: 50  CPPDWI-IGPNQTKCYAYFKNSTSWEKSEMFCRTYGGHLASLASSKELSFVQKLCNGNVS 108

Query: 602 KYSRWIGG 625
             S WIGG
Sbjct: 109 --SCWIGG 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,844
Number of Sequences: 28952
Number of extensions: 250361
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)