Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L19
(514 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 151 9e-36
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 151 1e-35
UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putati... 103 2e-21
UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3; ... 101 1e-20
UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E, puta... 100 2e-20
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 97 3e-19
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati... 95 8e-19
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 90 3e-17
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;... 90 3e-17
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 89 7e-17
UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142, w... 87 2e-16
UniRef50_Q9U7L5 Cluster: SmE protein; n=3; Trypanosomatidae|Rep:... 75 1e-12
UniRef50_Q4Q7I2 Cluster: Small nuclear ribonucleoprotein polypep... 69 8e-11
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 67 3e-10
UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiell... 63 4e-09
UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 61 2e-08
UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotei... 55 1e-06
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 46 7e-04
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 43 0.005
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 42 0.006
UniRef50_Q8SSF1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN E; n=1;... 42 0.006
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 42 0.011
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 41 0.014
UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein, puta... 41 0.019
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A... 41 0.019
UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to ENSANGP000... 40 0.025
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ... 40 0.025
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 40 0.025
UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 39 0.077
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 38 0.10
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 38 0.10
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ... 38 0.13
UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus ful... 38 0.13
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 38 0.13
UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotei... 38 0.13
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 37 0.23
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S... 37 0.31
UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putati... 37 0.31
UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus ory... 37 0.31
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.31
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 36 0.41
UniRef50_Q54HH8 Cluster: Putative small nuclear ribonucleopartic... 36 0.54
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 36 0.54
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46... 36 0.54
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 36 0.72
UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2; T... 36 0.72
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 36 0.72
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 0.72
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 0.95
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 35 0.95
UniRef50_A6R7U2 Cluster: Predicted protein; n=2; Eurotiomycetida... 35 0.95
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E... 35 0.95
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 35 1.2
UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 35 1.2
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 35 1.2
UniRef50_Q9L9N8 Cluster: ORF06; n=9; Borrelia burgdorferi group|... 34 1.7
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 34 1.7
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 34 2.2
UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila melanog... 34 2.2
UniRef50_UPI00006CFE60 Cluster: hypothetical protein TTHERM_0069... 33 2.9
UniRef50_Q247T3 Cluster: Putative uncharacterized protein; n=1; ... 33 2.9
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 33 2.9
UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6; Trypanoso... 33 3.8
UniRef50_UPI00015A7DD8 Cluster: UPI00015A7DD8 related cluster; n... 33 5.0
UniRef50_UPI00015A7780 Cluster: UPI00015A7780 related cluster; n... 33 5.0
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 32 6.7
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 32 6.7
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 32 6.7
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 32 6.7
UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotei... 32 6.7
UniRef50_Q8Z615 Cluster: Putative uncharacterized protein STY204... 32 8.8
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 32 8.8
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 32 8.8
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 32 8.8
UniRef50_P25239 Cluster: Type IIS restriction enzyme Eco57I (EC ... 32 8.8
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 151 bits (366), Expect = 9e-36
Identities = 69/88 (78%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Frame = +1
Query: 94 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 270
MAY+G KVQKVMVQPINLIFRYLQNRSR+ +WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 271 AEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
AE VHMK+KNRK +GRIM+KGDNITL+Q
Sbjct: 61 AEEVHMKTKNRKPLGRIMLKGDNITLLQ 88
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 151 bits (365), Expect = 1e-35
Identities = 68/88 (77%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 94 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 270
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 271 AEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
AE +H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putative;
n=2; Theileria|Rep: Small nuclear ribonucleoprotein,
putative - Theileria parva
Length = 91
Score = 103 bits (247), Expect = 2e-21
Identities = 46/79 (58%), Positives = 60/79 (75%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
K+QK+M QPIN IFR+ +RVQIWL++ N +IEG I GFDEYMN+VLD A VH+K
Sbjct: 7 KLQKIMTQPINQIFRFFTGGTRVQIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVHVKK 66
Query: 295 KNRKQIGRIMMKGDNITLI 351
+K +GRI++KGD +TLI
Sbjct: 67 NVKKDVGRILLKGDCMTLI 85
>UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3;
Dikarya|Rep: Putative uncharacterized protein - Ustilago
maydis (Smut fungus)
Length = 136
Score = 101 bits (242), Expect = 1e-20
Identities = 44/74 (59%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Frame = +1
Query: 124 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNR 303
KV VQPIN+IFR+LQ ++RV +WLY+NV+ RIEG I+GFDE+MN+ L +AE V K N+
Sbjct: 6 KVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNK 65
Query: 304 K-QIGRIMMKGDNI 342
+ ++GRI++KGDNI
Sbjct: 66 RVELGRILLKGDNI 79
>UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E,
putative; n=1; Tetrahymena thermophila SB210|Rep: Small
nuclear ribonucleoprotein E, putative - Tetrahymena
thermophila SB210
Length = 140
Score = 100 bits (239), Expect = 2e-20
Identities = 42/80 (52%), Positives = 60/80 (75%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
K K + P+ IF +LQ + RVQIWL+EN +++EG I+GFDEYMN+VLDE V K+
Sbjct: 4 KQTKTITNPLTTIFGFLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDCKT 63
Query: 295 KNRKQIGRIMMKGDNITLIQ 354
+++IGRI++KG+NITLI+
Sbjct: 64 NQKREIGRILLKGENITLIR 83
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 96.7 bits (230), Expect = 3e-19
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
KVQ++M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VLD+AE +++K
Sbjct: 5 KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKK 55
Query: 295 KNRKQIGRIMMKGDNITLI 351
RK +GRI++KGDNITL+
Sbjct: 56 DTRKSLGRILLKGDNITLM 74
>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein, putative - Cryptosporidium parvum
Iowa II
Length = 92
Score = 95.1 bits (226), Expect = 8e-19
Identities = 43/81 (53%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
K QK+M+QPIN IF ++ RVQIWLY++ NL +EG I GFDEYMNIVLD+A V+ K
Sbjct: 8 KTQKMMLQPINQIFHLFTSKQRVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKK 67
Query: 295 KNRKQ--IGRIMMKGDNITLI 351
+ R++ +G+++++G+NI+LI
Sbjct: 68 EVRRETSVGQLLLRGENISLI 88
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 89.8 bits (213), Expect = 3e-17
Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 4/87 (4%)
Frame = +1
Query: 106 GPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVH 285
G +K ++ PI+ IF+ LQ R+ V IWLYE + RIEG I GFDE+MN+V+D+A V
Sbjct: 6 GGGAARKTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVR 65
Query: 286 MKSK----NRKQIGRIMMKGDNITLIQ 354
M +K R+ +G+I++KGDN++LIQ
Sbjct: 66 MATKTDEEKRRPLGQILLKGDNVSLIQ 92
>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
E - Saccharomyces cerevisiae (Baker's yeast)
Length = 94
Score = 89.8 bits (213), Expect = 3e-17
Identities = 42/83 (50%), Positives = 60/83 (72%), Gaps = 7/83 (8%)
Frame = +1
Query: 124 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNR 303
K MV PIN IF +LQ ++ V IWL+E + +RI+G IVGFDE+MN+V+DEA + + S +
Sbjct: 8 KAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIPVNSADG 67
Query: 304 KQ-------IGRIMMKGDNITLI 351
K+ +G+I++KGDNITLI
Sbjct: 68 KEDVEKGTPLGKILLKGDNITLI 90
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 88.6 bits (210), Expect = 7e-17
Identities = 36/79 (45%), Positives = 58/79 (73%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
K+ K M+ P+ I +++ RV IWL+EN LRIEG + GFD+Y+N+VL + E V++K+
Sbjct: 5 KMTKAMILPVKFIVNLAKHKQRVSIWLFENTALRIEGTLSGFDQYINLVLTDTEEVYLKT 64
Query: 295 KNRKQIGRIMMKGDNITLI 351
R++IG I++KG+NI++I
Sbjct: 65 NTRRKIGTILLKGENISVI 83
>UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_142,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 95
Score = 87.0 bits (206), Expect = 2e-16
Identities = 36/80 (45%), Positives = 57/80 (71%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
K QK + QP++ F +++++IWL EN NLRI+G + GFDEY+N+VLD A K+
Sbjct: 9 KPQKKITQPLHAFFTLFTEKTQLEIWLVENDNLRIQGKLAGFDEYLNLVLDRAVEYDRKT 68
Query: 295 KNRKQIGRIMMKGDNITLIQ 354
K K++G+I++KG+NI L++
Sbjct: 69 KATKELGKILLKGENIVLVR 88
>UniRef50_Q9U7L5 Cluster: SmE protein; n=3; Trypanosomatidae|Rep:
SmE protein - Leptomonas collosoma
Length = 94
Score = 74.5 bits (175), Expect = 1e-12
Identities = 26/76 (34%), Positives = 56/76 (73%)
Frame = +1
Query: 124 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNR 303
K+MV+P ++I +++ + RV +WL + +++IEG+++G+DE+MN+VL +A + K+K
Sbjct: 14 KLMVKPSSVIHKFMTTQQRVCVWLVHDAHIKIEGNLLGYDEFMNVVLGDATETNSKTKES 73
Query: 304 KQIGRIMMKGDNITLI 351
+G+I+++ DN+ ++
Sbjct: 74 THLGKILLRSDNVGVV 89
>UniRef50_Q4Q7I2 Cluster: Small nuclear ribonucleoprotein
polypeptide e, putative; n=4; Trypanosomatidae|Rep:
Small nuclear ribonucleoprotein polypeptide e, putative
- Leishmania major
Length = 86
Score = 68.5 bits (160), Expect = 8e-11
Identities = 23/74 (31%), Positives = 51/74 (68%)
Frame = +1
Query: 130 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQ 309
M P ++ R++Q+ RV +WL + +R+EG+++G+DE+MN+VL + ++++ +
Sbjct: 8 MENPTGVVHRFMQDHQRVCVWLVHDPQIRLEGNLLGYDEFMNVVLGDTTETNLRNSKSYR 67
Query: 310 IGRIMMKGDNITLI 351
+G+I+++ DN+ +I
Sbjct: 68 LGKILLRSDNVGVI 81
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 66.9 bits (156), Expect = 3e-10
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = +1
Query: 205 VNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
V++ + H GFDEYMN+VLDEAE +++K RK +GRI++KGDNITL+
Sbjct: 88 VSVTLHVHAKGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
Score = 66.1 bits (154), Expect = 4e-10
Identities = 30/50 (60%), Positives = 41/50 (82%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVL 264
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I+ Y+N VL
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII---MYVNSVL 51
>UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiella
natans|Rep: MRNA splicing protein - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 80
Score = 62.9 bits (146), Expect = 4e-09
Identities = 33/76 (43%), Positives = 51/76 (67%)
Frame = +1
Query: 118 VQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSK 297
++K+MV PINL++RYL ++ + + L E N I G I+GFDEYMNIVL EA + + +
Sbjct: 1 MKKLMVHPINLLYRYLIGKNIILVCLKEK-NKTINGKIIGFDEYMNIVLSEAVAKNKEVE 59
Query: 298 NRKQIGRIMMKGDNIT 345
K + I++KG+ I+
Sbjct: 60 KIKNL--ILVKGNQIS 73
>UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 93
Score = 60.9 bits (141), Expect = 2e-08
Identities = 23/71 (32%), Positives = 48/71 (67%)
Frame = +1
Query: 139 PINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGR 318
P+ + YL+ R+R+++ L +N + +EG+++GFDEYMN+VL ++ V+ K R +G
Sbjct: 15 PLKIYVSYLKERARLRVHLNDNSKMYMEGNLLGFDEYMNLVLGDSYEVYPKENTRVPLGT 74
Query: 319 IMMKGDNITLI 351
+++G+ + ++
Sbjct: 75 SLLRGECVGMV 85
>UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein E - Guillardia theta (Cryptomonas phi)
Length = 78
Score = 54.8 bits (126), Expect = 1e-06
Identities = 26/74 (35%), Positives = 48/74 (64%)
Frame = +1
Query: 130 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQ 309
M+QPIN +F++L+ ++ V I + + +EG+++GFDE+MN+V+ E S +
Sbjct: 1 MIQPINQLFKFLKEKNLVTIIFKGSNDYILEGNLIGFDEFMNLVI-ENTTEKKDSLIVRD 59
Query: 310 IGRIMMKGDNITLI 351
+G +++KGD+I I
Sbjct: 60 LGYVLIKGDSILTI 73
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 45.6 bits (103), Expect = 7e-04
Identities = 18/48 (37%), Positives = 35/48 (72%)
Frame = +1
Query: 208 NLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
N I G+++GFD++MN++LD +E + + + K +G I+++GDN+ +I
Sbjct: 25 NKTIRGNLLGFDQHMNLLLDSSEEIPAEGE-AKGLGSIVVRGDNVVMI 71
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 42.7 bits (96), Expect = 0.005
Identities = 21/66 (31%), Positives = 41/66 (62%)
Frame = +1
Query: 157 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGD 336
+ + S++QI L N N + G + GFD++MN+V+D V+ KN IG ++++G+
Sbjct: 26 KQVHGTSKLQIKL--NANRVVVGTLRGFDQFMNLVIDNTMEVNGNDKN--DIGMVVIRGN 81
Query: 337 NITLIQ 354
++ +I+
Sbjct: 82 SVVMIE 87
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 42.3 bits (95), Expect = 0.006
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 13/69 (18%)
Frame = +1
Query: 175 SRVQIWLYENV------NLRIEGHIVGFDEYMNIVLDEAEXVHM---KSKNRKQI----G 315
+R+Q WL NV N + G +V +D+YMN+VL + E M K KNR ++ G
Sbjct: 6 TRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTLG 65
Query: 316 RIMMKGDNI 342
++++G+NI
Sbjct: 66 FVLLRGENI 74
>UniRef50_Q8SSF1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN E; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN E - Encephalitozoon cuniculi
Length = 111
Score = 42.3 bits (95), Expect = 0.006
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 133 VQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLD 267
V P+ I+ +L V+IW +++ + +G IVGFDEYMN+V+D
Sbjct: 46 VLPLEKIYDFLSRSIDVEIW-EKDMGAKHKGRIVGFDEYMNVVVD 89
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 41.5 bits (93), Expect = 0.011
Identities = 24/74 (32%), Positives = 46/74 (62%)
Frame = +1
Query: 130 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQ 309
M+ P+ L+ + R V + L +N L EG + G+D+YMN+VLD+ + + ++ +RK
Sbjct: 1 MIMPMKLLEESVNKR--VSLLLKDNRVL--EGTLTGYDDYMNMVLDDVDE-NSENVSRK- 54
Query: 310 IGRIMMKGDNITLI 351
+G ++++G N+ I
Sbjct: 55 LGTVVIRGSNVVRI 68
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 41.1 bits (92), Expect = 0.014
Identities = 16/45 (35%), Positives = 32/45 (71%)
Frame = +1
Query: 217 IEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
+ G +V FD ++N+VLD+ V + + ++GR++++GD++TLI
Sbjct: 25 LRGRLVSFDGHLNLVLDDC--VEIDEDSEVRLGRVLIRGDSVTLI 67
>UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein,
putative; n=3; Plasmodium|Rep: Small nuclear ribonuclear
protein, putative - Plasmodium falciparum (isolate 3D7)
Length = 101
Score = 40.7 bits (91), Expect = 0.019
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +1
Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVL-DEAEXVHMKS-KNRKQIGRIMMKGDNITLI 351
+IW+ + I G +VGFDEY+N+VL D E + + K +I ++++ G NIT++
Sbjct: 23 KIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKLLLNGLNITIM 80
>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 80
Score = 40.7 bits (91), Expect = 0.019
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 133 VQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKN-RKQ 309
V P+ +I R + IW+ N G +VGFD+++N+V+++ + ++
Sbjct: 3 VLPLEIIDRAINQ----PIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRH 58
Query: 310 IGRIMMKGDNITLI 351
GR+++ G+NIT++
Sbjct: 59 PGRMLLSGNNITVL 72
>UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to
ENSANGP00000018479; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000018479 - Nasonia
vitripennis
Length = 225
Score = 40.3 bits (90), Expect = 0.025
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 73 ESQYKQKMAYKGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLR--IEGHIVGFDE 246
+ +Y +K PK + P+ ++F+Y++NR RV+++ +R +E ++ FD
Sbjct: 97 QQRYSEKNVLSRMPKA----LGPLGVLFQYMENRIRVKVYTRNANGIRGHVEAYVAAFDR 152
Query: 247 YMNIVLDEAEXVHMKSKNRK 306
+ N+ L++ + + RK
Sbjct: 153 HWNLALEDCLELWTRKVKRK 172
>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins; n=1;
Aspergillus niger|Rep: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins -
Aspergillus niger
Length = 105
Score = 40.3 bits (90), Expect = 0.025
Identities = 23/81 (28%), Positives = 47/81 (58%)
Frame = +1
Query: 112 PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMK 291
P+++K I + +Y++ R Q+ N N ++ G + G+D +MNIVLDEA +
Sbjct: 6 PELKKSTEANIAVFQQYMEKRVFCQL----NGNRKVIGILRGYDVFMNIVLDEA-FEEKQ 60
Query: 292 SKNRKQIGRIMMKGDNITLIQ 354
+ IG I+++G+++ +++
Sbjct: 61 GGEKVAIGMIVIRGNSVVMLE 81
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 40.3 bits (90), Expect = 0.025
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +1
Query: 124 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNR 303
K+M I+ + ++ +V + N N ++G + FD +MN+ L+ AE V + N
Sbjct: 2 KIMADEISTLMT--NSKDKVVLLRLRN-NKTVQGTLKDFDIHMNLTLENAEDVSEEKPN- 57
Query: 304 KQIGRIMMKGDNITLI 351
IG+++++GDNI I
Sbjct: 58 -PIGKVLLRGDNILAI 72
>UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 107
Score = 38.7 bits (86), Expect = 0.077
Identities = 16/50 (32%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Frame = +1
Query: 211 LRIEGHIVGFDEYMNIVLDEAEXVHMKSKNR--KQIGRIMMKGDNITLIQ 354
L +G ++ +DE+MN+VL + E + ++ R K+IG ++M+G N++ ++
Sbjct: 24 LSFQGILMNYDEHMNLVLRQVEEIPQDNQQREPKRIGLMVMRGCNVSTVE 73
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 38.3 bits (85), Expect = 0.10
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +1
Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNI 342
QIW+ N G +VGFD+Y+N+VL+E + +++ ++ R + N+
Sbjct: 28 QIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIWYQAETDRRFWRTSKETANM 80
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 38.3 bits (85), Expect = 0.10
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +1
Query: 136 QPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIG 315
+P++++ + L NR V I L I+G + G+D +MN+VLD+AE + + IG
Sbjct: 9 RPMDILDQVL-NRQPVLISL--KGGREIKGVLQGYDVHMNLVLDKAEEI--VQGQAQSIG 63
Query: 316 RIMMKGDNITLI 351
++++GDN+ I
Sbjct: 64 TLIIRGDNVIYI 75
>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
Length = 81
Score = 37.9 bits (84), Expect = 0.13
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 130 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEA-EXVHMKSKNRK 306
M +P + YL+ R V+I + I G + G+DEYMN+VLDEA + + +
Sbjct: 1 MEKPKPELKHYLEKRILVKI----HGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKHI 56
Query: 307 QIGRIMMKGDNITLIQ 354
IG IM+ G++I ++
Sbjct: 57 PIGMIMILGNSILSVE 72
>UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus
fulgidus|Rep: SnRNP, putative - Archaeoglobus fulgidus
Length = 75
Score = 37.9 bits (84), Expect = 0.13
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +1
Query: 130 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQ 309
MV P ++ + RV++ EN ++ G + G D+YMN+ L A + K R
Sbjct: 1 MVLPNQMVKSMVGKIIRVEMKGEEN---QLVGKLEGVDDYMNLYLTNAMECKGEEKVRS- 56
Query: 310 IGRIMMKGDNITLIQ 354
+G I+++G+N+ LIQ
Sbjct: 57 LGEIVLRGNNVVLIQ 71
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 37.9 bits (84), Expect = 0.13
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 208 NLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
N G + G+D YMNIVL A + + +N+ R++++GDN+ +
Sbjct: 29 NREYSGILEGYDVYMNIVLQNASEI-INGENKGVYDRVLVRGDNVIFV 75
>UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotein
G; n=16; Bilateria|Rep: Probable small nuclear
ribonucleoprotein G - Caenorhabditis elegans
Length = 77
Score = 37.9 bits (84), Expect = 0.13
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +1
Query: 202 NVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
N N R+ G + GFD +MN+V+DEA + K +G +++G+++ +++
Sbjct: 22 NGNRRVSGILRGFDPFMNMVIDEA-VEYQKDGGSVNLGMTVIRGNSVVIME 71
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 37.1 bits (82), Expect = 0.23
Identities = 17/66 (25%), Positives = 37/66 (56%)
Frame = +1
Query: 157 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGD 336
+Y+ R +++ N + G + GFD +MN+VLD+ K + IG ++++G+
Sbjct: 11 KYMDKRMMLKL----NGGRAVTGILRGFDPFMNVVLDDT-VEECKDNTKNNIGMVVIRGN 65
Query: 337 NITLIQ 354
+I +++
Sbjct: 66 SIVMVE 71
>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 88
Score = 36.7 bits (81), Expect = 0.31
Identities = 15/58 (25%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +1
Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRK--QIGRIMMKGDNITLI 351
+IW+ + + G + GFD Y+N+VL++ + ++ R+ ++ +I++ G+NI ++
Sbjct: 21 KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL 78
>UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putative;
n=8; Eukaryota|Rep: Small nuclear ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 83
Score = 36.7 bits (81), Expect = 0.31
Identities = 19/56 (33%), Positives = 37/56 (66%)
Frame = +1
Query: 178 RVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNIT 345
R+QI+L N N ++ G + G+D +MN+VLD + +K + IG ++++G++I+
Sbjct: 21 RLQIYL--NGNRQVVGILRGYDTFMNLVLD--NTMEIKKDEQIDIGVVVIRGNSIS 72
>UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 36.7 bits (81), Expect = 0.31
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 202 NVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
N N ++ G + G+D +MNIVLDEA + + IG ++++G+++ +++
Sbjct: 10 NGNRKVIGILRGYDVFMNIVLDEA-FEEKQGGEKVAIGMVVIRGNSVVMLE 59
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 36.7 bits (81), Expect = 0.31
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 7/55 (12%)
Frame = +1
Query: 208 NLRIEGHIVGFDEYMNIVLDEAE----XVHMKSKNRKQI---GRIMMKGDNITLI 351
N EG +VGFD+++N++L++A +S+N K + GR+++ G+NI ++
Sbjct: 27 NREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAIL 81
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 36.3 bits (80), Expect = 0.41
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 154 FRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEA-EXVHMKSKNRKQIGRIMMK 330
F+YL+ QI++ G +V D MN++LD+A E ++ +IGR+++K
Sbjct: 13 FKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRVLIK 72
Query: 331 GDNITLI 351
G + I
Sbjct: 73 GSMVEFI 79
>UniRef50_Q54HH8 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 257
Score = 35.9 bits (79), Expect = 0.54
Identities = 15/48 (31%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Frame = +1
Query: 139 PINLIFRYLQNRSRVQIWLYENVNLR--IEGHIVGFDEYMNIVLDEAE 276
P++L+ R L+++S++++ + +R G+I+ FD++MNI+L + E
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVE 213
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 35.9 bits (79), Expect = 0.54
Identities = 15/47 (31%), Positives = 31/47 (65%)
Frame = +1
Query: 211 LRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
+R +G +V FDEYMNI+L++ E + + + +G++ ++ +N+ I
Sbjct: 1 MRYKGTLVSFDEYMNILLNDCEE-WIDNTKKGTLGKVFIRCNNVLYI 46
>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
sapiens (Human)
Length = 76
Score = 35.9 bits (79), Expect = 0.54
Identities = 15/51 (29%), Positives = 32/51 (62%)
Frame = +1
Query: 202 NVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
N ++G + GFD +MN+V+DE + S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 35.5 bits (78), Expect = 0.72
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 220 EGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
+G ++GFD+Y+N+VL+ E + K I ++++ G + ++
Sbjct: 46 KGTLIGFDDYVNMVLENVEEFDNEGPKGKVIKKMLLNGSQVAML 89
>UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2;
Thermoprotei|Rep: Small nuclear ribonucleoprotein -
Cenarchaeum symbiosum
Length = 106
Score = 35.5 bits (78), Expect = 0.72
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 220 EGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
+G + D YMN+++ +AE H SK GR++++G+N+ I+
Sbjct: 58 KGKMENVDSYMNLIMTDAEEFH-DSKVVANYGRVIVRGNNVLFIR 101
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 35.5 bits (78), Expect = 0.72
Identities = 16/47 (34%), Positives = 32/47 (68%)
Frame = +1
Query: 211 LRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
LRI+G + +D+++NI+L +AE + S R +G +++GD++ +I
Sbjct: 29 LRIKGVLKTYDQHLNIILGDAEEIGETSIRR--LGLTLVRGDSVVVI 73
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 35.5 bits (78), Expect = 0.72
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 217 IEGHIVGFDEYMNIVLDEA-EXVHMKSKNRKQI--GRIMMKGDNITLI 351
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Plasmodium vivax
Length = 95
Score = 35.1 bits (77), Expect = 0.95
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 160 YLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEA-EXVHMKSKNRKQIGRIMMKGD 336
YL+N +I + N + G + GFD+ NI+L E ++ +S + +G +++GD
Sbjct: 9 YLEN----EILVITNDSRIFTGKLKGFDQTTNIILGNCYERIYKESLEKISLGLYIIRGD 64
Query: 337 NITLI 351
+TLI
Sbjct: 65 TVTLI 69
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 35.1 bits (77), Expect = 0.95
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +1
Query: 223 GHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
G + G+D+ MN+V+D+ + + + +G ++++G NI L+
Sbjct: 49 GILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLV 91
>UniRef50_A6R7U2 Cluster: Predicted protein; n=2;
Eurotiomycetidae|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 35.1 bits (77), Expect = 0.95
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 208 NLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
N G ++GFD+Y+N+VL++ K + +I++ G+NI ++
Sbjct: 46 NSEFSGTLLGFDDYVNMVLEDVTEFDYTGSQTK-LSKILLNGNNICML 92
>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Pyrococcus furiosus
Length = 76
Score = 35.1 bits (77), Expect = 0.95
Identities = 15/43 (34%), Positives = 29/43 (67%)
Frame = +1
Query: 223 GHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
G ++G+D ++N+VL AE + + K+ G+I+++GDN+ I
Sbjct: 29 GKLIGYDIHLNVVLANAELL-QDGEVVKKYGKIVIRGDNVLAI 70
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 34.7 bits (76), Expect = 1.2
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +1
Query: 202 NVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
N N + G + GFD +MNI L + V + + +IG ++++G++I L++
Sbjct: 24 NGNRTVHGILRGFDTFMNIALKDTVEV-VSPTEKYEIGMVIIRGNSILLME 73
>UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 137
Score = 34.7 bits (76), Expect = 1.2
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRK--QIGRIMMKGDNITLIQ 354
QI + N I G I D Y+NI L +A+ + + KN++ + I+++ NI IQ
Sbjct: 42 QITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQEILIQSRNIRFIQ 100
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 34.7 bits (76), Expect = 1.2
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRK--QIGRIMMKGDNITLI 351
+IW+ + I G + GFD+YMN+VL++ + K ++ ++ G+N+ ++
Sbjct: 23 KIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDALVNGNNVAML 80
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 34.7 bits (76), Expect = 1.2
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 7/54 (12%)
Frame = +1
Query: 214 RIEGHIVGFDEYMNIVLDEA-EXVHMKSKNRK------QIGRIMMKGDNITLIQ 354
+I+G + GFD ++N+V+DEA E VH ++ N + G ++++G+++T ++
Sbjct: 73 KIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVWQDGDRCGTVVVRGNSVTSLE 126
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 34.7 bits (76), Expect = 1.2
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 223 GHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
G + FD +MN+VL++AE + R+ +G ++++GDNI I
Sbjct: 38 GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYI 79
>UniRef50_Q9L9N8 Cluster: ORF06; n=9; Borrelia burgdorferi
group|Rep: ORF06 - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 184
Score = 34.3 bits (75), Expect = 1.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 181 VQIWLYENVNLRIEGHIVGFDEYMN---IVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
V+ W+Y N+ + G + F + + E E + + +KN IG + KGDN+ L+
Sbjct: 24 VKNWIYSNIFIIKIGTVKEFKHQTQEAIVTIPEFEDLEIHTKNISNIGLELSKGDNVLLL 83
Query: 352 Q 354
Q
Sbjct: 84 Q 84
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 34.3 bits (75), Expect = 1.7
Identities = 15/66 (22%), Positives = 41/66 (62%)
Frame = +1
Query: 157 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGD 336
RY+ + R+++ N N + G + GFD+++N+VLD++ + + + +G ++++G+
Sbjct: 29 RYMDKKLRLRL----NGNRSVTGILRGFDQFLNLVLDDS--TNDTTTEKTPMGMVVVRGN 82
Query: 337 NITLIQ 354
++ ++
Sbjct: 83 SVVSME 88
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 33.9 bits (74), Expect = 2.2
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Frame = +1
Query: 178 RVQIWLYENVNLRIE------GHIVGFDEYMNIVLDEAE---XVHMKSKNRKQI----GR 318
R++ WL V + I G + +D +MNIVL +AE V K N K+I G
Sbjct: 6 RLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNFKEIKRVVGL 65
Query: 319 IMMKGDNI 342
I+++GDNI
Sbjct: 66 ILIRGDNI 73
>UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila
melanogaster RE35747p; n=1; Yarrowia lipolytica|Rep:
Similar to tr|Q8IGS9 Drosophila melanogaster RE35747p -
Yarrowia lipolytica (Candida lipolytica)
Length = 131
Score = 33.9 bits (74), Expect = 2.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 217 IEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
+ GH++ D +MN+ L E E +N + ++G NI +Q
Sbjct: 27 LRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYVRGSNIKALQ 72
>UniRef50_UPI00006CFE60 Cluster: hypothetical protein
TTHERM_00691460; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00691460 - Tetrahymena
thermophila SB210
Length = 518
Score = 33.5 bits (73), Expect = 2.9
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 73 ESQYKQKMAYKGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYM 252
+ + Q M GP + +M+ +F N S V+IW Y+N L +E H +Y
Sbjct: 424 DKKISQIMYQLGPLDIHGIMIDETMKLFISYHN-SYVKIWNYQNKQLLMEAHFTEQGQYQ 482
Query: 253 NIV--LDEAEXVHMKSKNR 303
+ LD+ + + K +
Sbjct: 483 QAISLLDKGFIIFINQKTK 501
>UniRef50_Q247T3 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1357
Score = 33.5 bits (73), Expect = 2.9
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 181 VQIWLYENVNLR-IEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGD 336
+Q++ ENV L+ IE ++G D +N+ +D + ++K+ + +I + +KGD
Sbjct: 461 IQVFQDENVQLQPIEDQVIGSDLQLNVSIDPSSQQYIKNASFIKIVNLPIKGD 513
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 33.5 bits (73), Expect = 2.9
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Frame = +1
Query: 223 GHIVGFDEYMNIVLDEA-EXVHMKSKNRKQI--GRIMMKGDNITLI 351
G + GFD+ +NI+LDE+ E V+ + +Q+ G +++GDN+ +I
Sbjct: 91 GTLKGFDQTINIILDESHERVYSMNAGIEQVVLGLHIIRGDNVAVI 136
>UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6;
Trypanosomatidae|Rep: Lsm7p protein, putative -
Leishmania major
Length = 91
Score = 33.1 bits (72), Expect = 3.8
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 217 IEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
+ G + GFD +N+VL +AE H + RK IG +++G + LI
Sbjct: 35 VHGVLKGFDNNVNLVLADAELWHRDTHVRK-IGACVVRGGPVNLI 78
>UniRef50_UPI00015A7DD8 Cluster: UPI00015A7DD8 related cluster; n=1;
Danio rerio|Rep: UPI00015A7DD8 UniRef100 entry - Danio
rerio
Length = 396
Score = 32.7 bits (71), Expect = 5.0
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -2
Query: 363 VHVLYECYVVSLHHYSSYLFSVFRFHMDXFSFVENNIHVFIKTHDVSFNPQIHVFI*PNL 184
+H L Y+ SL H + F H ++F+ IH +I +S + I+ FI +
Sbjct: 268 IHALIHIYMHSLIHSFIHAFIYLCIHSFIYTFIYLCIHAYIHGIHISMHSYIYAFIDSYI 327
Query: 183 H 181
H
Sbjct: 328 H 328
>UniRef50_UPI00015A7780 Cluster: UPI00015A7780 related cluster; n=1;
Danio rerio|Rep: UPI00015A7780 UniRef100 entry - Danio
rerio
Length = 420
Score = 32.7 bits (71), Expect = 5.0
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = -2
Query: 360 HVLYECYVVSLH-HYSSYLF----SVFRFHMDXFSFVENNIHVFIKTHDVSFNPQIHVFI 196
H++Y V +H HY ++F S+ R H+ FS + IH I H SF IH FI
Sbjct: 60 HIIYSHSVSFIHSHYHLFMFLFIHSLTRIHLFTFSVIHTFIHNLI-MHLHSF---IHSFI 115
Query: 195 *PNLHTTPVL*VSEDKVDGLYHHLLNFRWAFISHFLF 85
+H+ + + + H+L + +F F F
Sbjct: 116 HSFIHSFTFIHNQCHALIQSFSHILIYECSFTCSFSF 152
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 32.3 bits (70), Expect = 6.7
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +1
Query: 223 GHIVGFDEYMNIVLDEA-EXVHMKSKNRKQI--GRIMMKGDNITLI 351
G + GFD+ +NI++DE E V + +QI G +++GDNI +I
Sbjct: 24 GTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRGDNIAVI 69
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 32.3 bits (70), Expect = 6.7
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 13/69 (18%)
Frame = +1
Query: 175 SRVQIWLYENVNLRIE------GHIVGFDEYMNIVLDEAEXVH-MKSKN------RKQIG 315
SR++ WL V + I G + +D +MNIVL +AE +KS+ ++ +G
Sbjct: 5 SRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVG 64
Query: 316 RIMMKGDNI 342
I+++G+NI
Sbjct: 65 LILIRGENI 73
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 32.3 bits (70), Expect = 6.7
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Frame = +1
Query: 217 IEGHIVGFDEYMNIVLDEA-EXVHMKSKN------------RKQIGRIMMKGDNITLI 351
++G I GFD+ MNIV+ EA E + +S N Q+G +++GDN+ I
Sbjct: 29 VKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEKGKGQEQETQVGDALIRGDNVITI 86
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 32.3 bits (70), Expect = 6.7
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 223 GHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
G + G+D +MN+VL +AE + RK +G ++++GD + +
Sbjct: 29 GTLDGYDIHMNLVLLDAEEIQNGEVVRK-VGSVVIRGDTVVFV 70
>UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotein
G; n=7; Ascomycota|Rep: Probable small nuclear
ribonucleoprotein G - Schizosaccharomyces pombe (Fission
yeast)
Length = 77
Score = 32.3 bits (70), Expect = 6.7
Identities = 15/58 (25%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +1
Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRK-QIGRIMMKGDNITLIQ 354
Q+++ N + ++ G + G+D ++NIVL+++ + K K +IG + ++G+++ +I+
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDS--IEEKVDGEKVKIGSVAIRGNSVIMIE 71
>UniRef50_Q8Z615 Cluster: Putative uncharacterized protein STY2046;
n=1; Salmonella typhi|Rep: Putative uncharacterized
protein STY2046 - Salmonella typhi
Length = 100
Score = 31.9 bits (69), Expect = 8.8
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 21 RSRVWRRLFVSTIIFHSRKSIQTKNGL*RPTESSEGDGTAHQPYLPIPTEPESCANLA 194
R WR + V I+ + +IQTK +G+ P P PT +S A+ A
Sbjct: 21 RLSFWRYILVFDIVKSPKVTIQTKRIFMSEKNKPQGENKPQHPVAPKPTPTQSTADFA 78
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 31.9 bits (69), Expect = 8.8
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Frame = +1
Query: 223 GHIVGFDEYMNIVLDEAEXVHMKSKN------RKQIGRIMMKGDNI 342
G+++ FD +MN+VL + + K ++ +G IM++G+NI
Sbjct: 21 GNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIMLRGENI 66
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 31.9 bits (69), Expect = 8.8
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Frame = +1
Query: 175 SRVQIWLYENVNLRIE------GHIVGFDEYMNIVLDEAEXVHM---------KSKNRKQ 309
+R+Q WL V + I+ G + FD++MN+VL + E + K + ++
Sbjct: 6 TRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRT 65
Query: 310 IGRIMMKGDNI 342
+G IM++G+NI
Sbjct: 66 LGFIMLRGENI 76
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 31.9 bits (69), Expect = 8.8
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Frame = +1
Query: 223 GHIVGFDEYMNIVLDEAEXVHMKS------KNRKQIGRIMMKGDNI 342
G + FD+++N++L E E ++ + ++ +G I+++GDNI
Sbjct: 27 GTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDNI 72
>UniRef50_P25239 Cluster: Type IIS restriction enzyme Eco57I (EC
3.1.21.4) (Endonuclease Eco57I) [Includes:
Adenine-specific methyltransferase activity Eco57IA (EC
2.1.1.72) (M.Eco57IA)]; n=2; Bacteria|Rep: Type IIS
restriction enzyme Eco57I (EC 3.1.21.4) (Endonuclease
Eco57I) [Includes: Adenine-specific methyltransferase
activity Eco57IA (EC 2.1.1.72) (M.Eco57IA)] -
Escherichia coli
Length = 998
Score = 31.9 bits (69), Expect = 8.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 53 YHNFSFTKVNTNKKWLIKAHRKFRR*WYSPSTLSSDTY 166
+ NFSF +V KKWL + + Y S+L SDT+
Sbjct: 633 HDNFSFYEVKDFKKWLTREDKYLLSSTYQTSSLDSDTW 670
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 475,831,079
Number of Sequences: 1657284
Number of extensions: 9111842
Number of successful extensions: 25130
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 23833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25050
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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