Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L19
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 103 2e-23
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 32 0.044
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 31 0.13
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 30 0.18
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 0.71
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.2
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 2.2
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 2.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 3.8
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 26 3.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 3.8
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 6.7
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 6.7
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 8.8
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.8
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 103 bits (246), Expect = 2e-23
Identities = 46/80 (57%), Positives = 64/80 (80%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
+VQKVM+ PIN IF+ LQ + V IWL+E ++R++G I GFDE+MNIVLD+A V K+
Sbjct: 4 RVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKN 63
Query: 295 KNRKQIGRIMMKGDNITLIQ 354
N++++GRI++KGDNITLIQ
Sbjct: 64 -NKRELGRILLKGDNITLIQ 82
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 32.3 bits (70), Expect = 0.044
Identities = 15/58 (25%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +1
Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRK-QIGRIMMKGDNITLIQ 354
Q+++ N + ++ G + G+D ++NIVL+++ + K K +IG + ++G+++ +I+
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDS--IEEKVDGEKVKIGSVAIRGNSVIMIE 71
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 30.7 bits (66), Expect = 0.13
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = +1
Query: 187 IWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
+W+ G +VGFD+Y+NIVL + + ++ +++ G+ + ++
Sbjct: 19 LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCML 73
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 214 RIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKG 333
+I G + GFD+ MN+VLD+ E ++ K G I G
Sbjct: 45 QITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLG 84
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.3 bits (60), Expect = 0.71
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 261 SRRS*XSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEV 413
S++ S ++KQ+T + N + + T + EP+ L +FAK+ V
Sbjct: 378 SKQDSPSTVPVDKQETAKPINKQVSSNETSAQEEPRESVAALRARFAKANV 428
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 494 LEIEKTSIPVTVISLIHM*LELLFTRNDFTFSKFIT*LHTDALG 363
LE+ S+ T ++ + +LLF +N+ F KF+ H +G
Sbjct: 533 LELTSESLSSTNDTIRRLQRDLLFLQNELRFEKFVRQQHLQNIG 576
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 342 YVVSLHHYSSYLFSVFRFHMDXFSFVENNIHVF 244
Y+VS+ S Y+ R H ++ENNI VF
Sbjct: 96 YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVF 128
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 223 GHIVGFDEYMNIVLDEA-EXVHMKSKN 300
G ++ FD +MN+VL + E H+K +N
Sbjct: 26 GQLLAFDGFMNLVLSDCQEYRHIKKQN 52
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 88 QKMAYKGPPKVQKVMVQPI 144
+K+AYKGPP+++K + I
Sbjct: 945 KKIAYKGPPQLRKTLQSQI 963
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 342 NTHTEREPQRVSVKLGYKFAKSEVIPS 422
+ HT R +S+KL +++ S+VIP+
Sbjct: 308 DNHTSRVAILISMKLAFQYQLSQVIPT 334
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 294 EKQKTNRKNNDEGRQHNTHTEREPQR 371
+ + +NND R + HT REPQ+
Sbjct: 1430 QSRSFTNENNDNLRSVSRHTRREPQQ 1455
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 32 LAAFICFYHNFSFTKVNTNKKWLIKAHRKFR 124
L AF+CF + T T +KW + FR
Sbjct: 723 LLAFLCFAMHILLTPEATLRKWASSIYLSFR 753
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 244 HQNPRCVLQSSDSRFHIAKFAHDS 173
H N R L S DSRFH H +
Sbjct: 308 HHNVRTTLFSDDSRFHSKIHTHST 331
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 264 RRS*XSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEVI 416
RRS + ++EK+K K D+ ++ +T +++ Q ++ G K E +
Sbjct: 261 RRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKN-QIDEIEKGQKEVDEEPV 310
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.6 bits (51), Expect = 8.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 91 KMAYKGPPKVQKVM 132
K+ YKGPP+V+K +
Sbjct: 494 KIVYKGPPQVRKAL 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,231
Number of Sequences: 5004
Number of extensions: 41049
Number of successful extensions: 114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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