Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L19
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 97 1e-20
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 67 9e-12
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 42 4e-04
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 40 0.001
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 38 0.006
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 29 2.9
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 27 6.7
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 8.8
05_02_0060 + 6236624-6237040 27 8.8
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
KVQ++M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VLD+AE +++K
Sbjct: 5 KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKK 55
Query: 295 KNRKQIGRIMMKGDNITLI 351
RK +GRI++KGDNITL+
Sbjct: 56 DTRKSLGRILLKGDNITLM 74
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 66.9 bits (156), Expect = 9e-12
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = +1
Query: 205 VNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
V++ + H GFDEYMN+VLDEAE +++K RK +GRI++KGDNITL+
Sbjct: 88 VSVTLHVHAKGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/50 (60%), Positives = 41/50 (82%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVL 264
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I+ Y+N VL
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII---MYVNSVL 51
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/82 (26%), Positives = 46/82 (56%)
Frame = +1
Query: 109 PPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHM 288
PP ++K M + + + Y + + + N N + G + GFD++MN+V+D V+
Sbjct: 7 PPDLKKYMDKKLQTLMVYSFTLFSI-LPVKLNANRVVIGTLRGFDQFMNLVVDNTVEVNG 65
Query: 289 KSKNRKQIGRIMMKGDNITLIQ 354
KN IG ++++G+++ +I+
Sbjct: 66 NEKN--DIGMVVIRGNSVVMIE 85
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/66 (25%), Positives = 41/66 (62%)
Frame = +1
Query: 157 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGD 336
+Y+ + ++++ N N I G + GFD++MN+V+D V + ++ IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRVIVGTLRGFDQFMNLVVDNT--VEVNGNDKTDIGMVVVRGN 65
Query: 337 NITLIQ 354
++ +I+
Sbjct: 66 SVVMIE 71
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 37.5 bits (83), Expect = 0.006
Identities = 15/59 (25%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +1
Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRK--QIGRIMMKGDNITLIQ 354
+IW+ + + G + GFD Y+N+VL++ ++ R+ ++ +I++ G+NI +++
Sbjct: 91 KIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAIVR 149
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Frame = +1
Query: 217 IEGHIVGFDEYMNIVLDEA--------EXVHMKSKNRKQIGRIMMKGDNITLI 351
+ G + G+D+ +N+VLDEA + + + K R Q+G I+ +G + L+
Sbjct: 36 VTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTR-QLGLIVCRGTAVMLV 87
>03_02_0142 +
5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 111 TESSEGDGTAHQPYLPIPTEPES 179
T S +G G H +L IPT+P +
Sbjct: 153 TTSRDGSGNQHSQFLGIPTDPRN 175
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 109 PPKVQKVMVQPINLIFRYLQNRSRVQIWLY 198
PPK QK + +Y++N R W+Y
Sbjct: 506 PPKCQKTQCCANGMSLKYVKNYKRKAFWIY 535
>05_02_0060 + 6236624-6237040
Length = 138
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +3
Query: 18 TRSRVWRRLFVSTIIFHSRKSIQTKNGL*RPTESSEGDGTAHQPYLPIPT 167
TR R WR+ V + HSR S P EG A QP P+PT
Sbjct: 80 TRPRSWRQGRVPWLRRHSRASA--------PASRGEGGEAARQPPGPLPT 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,199,175
Number of Sequences: 37544
Number of extensions: 232684
Number of successful extensions: 560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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