Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L19
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...   132   1e-31
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    38   0.004
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    38   0.004
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    36   0.017
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    31   0.37 
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    29   2.0  
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    28   3.4  
Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z66520-7|CAA91384.1|  286|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    27   6.0  
AC024815-1|ABB88220.1|  344|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score =  132 bits (319), Expect = 1e-31
 Identities = 58/79 (73%), Positives = 72/79 (91%)
 Frame = +1

Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
           K+ KVMVQP+NLIFRYLQNR+RVQIWLYE+V  R+EG+I+GFDE+MN+V DEAE V+MK+
Sbjct: 5   KLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64

Query: 295 KNRKQIGRIMMKGDNITLI 351
           K R +IGRI++KGDNITLI
Sbjct: 65  KGRNKIGRILLKGDNITLI 83


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 16/51 (31%), Positives = 32/51 (62%)
 Frame = +1

Query: 202 NVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
           N N R+ G + GFD +MN+V+DEA   + K      +G  +++G+++ +++
Sbjct: 22  NGNRRVSGILRGFDPFMNMVIDEA-VEYQKDGGSVNLGMTVIRGNSVVIME 71


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 16/51 (31%), Positives = 32/51 (62%)
 Frame = +1

Query: 202 NVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLIQ 354
           N N R+ G + GFD +MN+V+DEA   + K      +G  +++G+++ +++
Sbjct: 22  NGNRRVSGILRGFDPFMNMVIDEA-VEYQKDGGSVNLGMTVIRGNSVVIME 71


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVH--MKSKNRKQIGRIMMKGDNITLI 351
           +IW+    +  I G + GFD+Y+N+VL++          K   ++  I++ G++IT++
Sbjct: 25  KIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGNHITML 82


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 297 KQKTNRKNNDEGRQHNTHTEREPQR 371
           K K N +N D+G+QH    E++PQ+
Sbjct: 350 KSKRNSQNEDDGQQHQHQNEQQPQQ 374


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 297 KQKTNRKNNDEGRQHNTHTEREPQR 371
           K K N +N D+G+QH    E++PQ+
Sbjct: 350 KSKRNSQNEDDGQQHQHQNEQQPQQ 374


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 49  FLP*FFIHESQYKQKMAYKGPPKVQKVMVQPINLIFRYLQNRS 177
           FLP F I    Y+ K     PP      V+ +N IFRY   R+
Sbjct: 431 FLPQFQIF--MYQSKPPTSSPPSGSSAQVEDVNSIFRYSTGRN 471


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +1

Query: 211 LRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGDNITLI 351
           +  +G +V  D YMN+ L  AE  ++   ++  +G I+++ +N+  +
Sbjct: 29  MEYKGVLVAVDSYMNLQLAHAEE-YIDGNSQGNLGEILIRCNNVLYV 74


>Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical
           protein F46B6.4 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = +1

Query: 130 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAE-------XVHM 288
           MV     I   L  RS V  WLY N  + IE  I G     ++V++E+E         H+
Sbjct: 399 MVTKCKTIRLRLDARSPVIEWLYHNELVVIEPTIDGNYLIFDVVMNESEIGRFRKKFAHL 458

Query: 289 KSKNRKQI 312
           K KN + +
Sbjct: 459 KKKNSQSV 466


>Z66520-7|CAA91384.1|  286|Caenorhabditis elegans Hypothetical
           protein F49E12.10 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 357 VLYECYVVSLHHYSSYLFSVFRFHMDXFSF 268
           VL+ C+VVS + ++SY      FH   + F
Sbjct: 177 VLFRCHVVSHYIFTSYAILTTTFHHSGYHF 206


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/48 (27%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
 Frame = +1

Query: 217 IEGHIVGFDEYMNIVLDEA-EXVHMKSKN--RKQIGRIMMKGDNITLI 351
           I G + GFD+ +N+V+++A E  + +++      +G  +++G+N+ +I
Sbjct: 23  IVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRGENVAII 70


>AC024815-1|ABB88220.1|  344|Caenorhabditis elegans Hypothetical
           protein Y54F10BL.1 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 354 LYECYVVSLHHYSSYLFSVFRFHMDXFSFVENNI-HVFIK 238
           + EC  + L++++ Y FSV +       +++NN   VFI+
Sbjct: 304 MIECQKIQLNNWNYYCFSVRKLSSHDILYIKNNFDFVFIE 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,189,370
Number of Sequences: 27780
Number of extensions: 227378
Number of successful extensions: 620
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)