Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L19
(514 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 124 4e-29
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 122 1e-28
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 40 0.001
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 39 0.002
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 37 0.009
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 33 0.15
At2g16640.1 68415.m01910 chloroplast outer membrane protein, put... 29 1.4
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 28 4.2
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 28 4.2
At2g36650.1 68415.m04495 expressed protein 27 5.6
At5g08141.1 68418.m00950 bZIP transcription factor family protei... 27 7.4
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 124 bits (299), Expect = 4e-29
Identities = 54/79 (68%), Positives = 69/79 (87%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I GFDEYMN+VLDEAE V +K
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64
Query: 295 KNRKQIGRIMMKGDNITLI 351
K RK +GRI++KGDNITL+
Sbjct: 65 KTRKPLGRILLKGDNITLM 83
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 122 bits (294), Expect = 1e-28
Identities = 53/79 (67%), Positives = 68/79 (86%)
Frame = +1
Query: 115 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKS 294
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I GFDEYMN+VLDEAE V +K
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64
Query: 295 KNRKQIGRIMMKGDNITLI 351
RK +GRI++KGDNITL+
Sbjct: 65 NTRKPLGRILLKGDNITLM 83
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/66 (24%), Positives = 40/66 (60%)
Frame = +1
Query: 157 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGD 336
+Y+ + ++++ N N + G + GFD++MN+V+D V + ++ IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRMVTGTLRGFDQFMNLVVDNT--VEVNGNDKTDIGMVVIRGN 65
Query: 337 NITLIQ 354
+I ++
Sbjct: 66 SIVTVE 71
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/66 (24%), Positives = 40/66 (60%)
Frame = +1
Query: 157 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQIGRIMMKGD 336
+Y+ + ++++ N N + G + GFD++MN+V+D V + ++ IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRMVVGTLRGFDQFMNLVVDNT--VEVNGDDKTDIGMVVIRGN 65
Query: 337 NITLIQ 354
+I ++
Sbjct: 66 SIVTVE 71
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 36.7 bits (81), Expect = 0.009
Identities = 15/58 (25%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +1
Query: 184 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRK--QIGRIMMKGDNITLI 351
+IW+ + + G + GFD Y+N+VL++ + ++ R+ ++ +I++ G+NI ++
Sbjct: 21 KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL 78
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 202 NVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKNRKQ---IGRIMMKGDNITLI 351
N I G + GFD+ NI+LDE+ +K Q +G +++GDNI +I
Sbjct: 20 NDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72
>At2g16640.1 68415.m01910 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1206
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 288 EIEKQKTNRKNNDEGRQHNTHTEREPQRVS 377
E+EKQ+++R + D N+H E EP+ VS
Sbjct: 404 ELEKQQSSRVHVDPEITENSHVETEPEVVS 433
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Frame = +1
Query: 214 RIEGHIVGFDEYMNIVLDEA-EXVH-----MKSKNR-KQIGRIMMKGDNITLI 351
++ G + G+D+ +N+VLDEA E V +K+ ++ +++G I+ +G + L+
Sbjct: 28 QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Frame = +1
Query: 214 RIEGHIVGFDEYMNIVLDEA-EXVH-----MKSKNR-KQIGRIMMKGDNITLI 351
++ G + G+D+ +N+VLDEA E V +K+ ++ +++G I+ +G + L+
Sbjct: 28 QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80
>At2g36650.1 68415.m04495 expressed protein
Length = 373
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 202 NVNLRIEGHIVGFDEYMNIVLDEAEXVHMKSKN 300
N+ +EG + + Y++++ +E E + MKS N
Sbjct: 210 NIVKELEGKVKDMEAYVDVLQEEKEELFMKSSN 242
>At5g08141.1 68418.m00950 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
Length = 137
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 193 LYENVNLRIEGHIVGFDEYM----NIVLDEAEXVHMKSKNRKQIGRIMMK 330
L++ ++ ++ H+ D+Y N+V DE + + + NR+ R M+
Sbjct: 6 LHDEDDVHVQDHVYNHDQYHHQQPNVVTDEEKRLRRMASNRESARRTRMR 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,273,831
Number of Sequences: 28952
Number of extensions: 200158
Number of successful extensions: 509
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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