Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L18
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 157 1e-39
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 1.3
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.3
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 3.0
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 4.0
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 25 7.0
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 7.0
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 9.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.3
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.3
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 9.3
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 9.3
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 157 bits (381), Expect = 1e-39
Identities = 77/140 (55%), Positives = 105/140 (75%), Gaps = 2/140 (1%)
Frame = +1
Query: 40 KIIKXSGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 213
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 214 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 393
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 394 YNAILEDLVFPAEIVGKRIR 453
+NAILED+VFP EI+GKR R
Sbjct: 124 HNAILEDIVFPTEIIGKRTR 143
Score = 33.5 bits (73), Expect = 0.026
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 540 SSVYKKLTGREVTFEFP 590
SSVY KLTG+ VTFEFP
Sbjct: 172 SSVYHKLTGKNVTFEFP 188
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 522 IKWTPSSSVYKKLTGREVTFEFPEP 596
+K PS+ Y +L E+ F+FPEP
Sbjct: 635 VKKVPSAKSYYELGASEMEFKFPEP 659
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 332 LGLGRILRSPTKTTCLPLNFFSSSRTS 252
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 202 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 294
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 360 KEATLKDIDLCVQCYPRGLGLPC 428
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 492 KCTLMSCEPSNLNPDALA 439
KCTL++ E ++N DALA
Sbjct: 66 KCTLLTTEIEHINTDALA 83
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 322 PKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 447
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 378 P*AWPLLFVSNTSFVAGLRQDLTVSN 301
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 483 LMSCEPSNLNPDALAYDLSREDQVLEDSIV 394
L S EP +NP + RE ++ED IV
Sbjct: 13 LYSYEPQEINPGEEIPENEREISIVEDEIV 42
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = -2
Query: 438 YDLSREDQVLEDSIVHRGQCP*AWPLLFVSNTSFVAGLRQDLTVSNKDYMFTTELLFELT 259
YD +D L++ I H CP W + S + + ++ F + ++ T
Sbjct: 76 YDWEDDDDPLKEHITHSPSCP--WAYILSSKNNPNQNPQAAALTKCREQTF-VDKVWPYT 132
Query: 258 NKPD 247
N+PD
Sbjct: 133 NRPD 136
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 456 SSWTAHSSLRCT*TKTNRLLLNIKWTPSSSVYKKLTGREVTFEFP 590
SSW+ LRC+ K + N+ + S V L+G E+T E P
Sbjct: 329 SSWSQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELT-EIP 372
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 552 CIQNWKVSTLCSIVVCWFLSKCTLMSCEP 466
C++N +++++C V FLS+ TL+ P
Sbjct: 213 CLKNAEITSICMAVREIFLSQPTLLELTP 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,293
Number of Sequences: 5004
Number of extensions: 52558
Number of successful extensions: 168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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