Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L18
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 140 6e-34
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 124 6e-29
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 73 2e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.4
04_04_1644 + 35015849-35016838 29 4.1
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 4.1
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 7.2
03_02_0488 - 8824980-8825267,8825364-8827775 28 7.2
06_02_0105 - 11893666-11895483,11895661-11896422 27 9.6
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 27 9.6
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 140 bits (340), Expect = 6e-34
Identities = 74/147 (50%), Positives = 105/147 (71%), Gaps = 2/147 (1%)
Frame = +1
Query: 28 TMSTKIIKXSGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSII 201
T KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++
Sbjct: 3 TARKKIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVV 62
Query: 202 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRT 381
I+VP KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RT
Sbjct: 63 IHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRT 118
Query: 382 LTSVYNAILEDLVFPAEIVGKRIRVQV 462
LT+V++ ILED+V+PAEIVGKRIR ++
Sbjct: 119 LTAVHDGILEDVVYPAEIVGKRIRYRL 145
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 455 FKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANGTRSDLRVPRT 595
++LDG+++IK+ LD ++ E+K++TF + G P T
Sbjct: 143 YRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYPMT 189
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 124 bits (299), Expect = 6e-29
Identities = 66/122 (54%), Positives = 90/122 (73%), Gaps = 2/122 (1%)
Frame = +1
Query: 94 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 267
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 268 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 447
EKKFSGK VV V R+I+ P + V RPR+RTLT+V++ ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 448 IR 453
+R
Sbjct: 154 VR 155
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 455 FKLDGSQLIKVHLDKNQQTTIEHKVDTF 538
+ LDG +++K+ LD ++ E+K+DTF
Sbjct: 156 YHLDGRKIMKIFLDPKERNNTEYKLDTF 183
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 540 SSVYKKLTGREVTFEFP 590
SSVY++L G++V F++P
Sbjct: 184 SSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 72.9 bits (171), Expect = 2e-13
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = +1
Query: 148 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 327
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 328 PSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVG 441
P +K + PR+RTL +V++ ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 362 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 246
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_04_1644 + 35015849-35016838
Length = 329
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 144 PKLGFEVGVGFEFDQRLRDRGLEGIRLSTAXFDDLXTHR 28
P L FE+ + +FDQR+ E ++L DL HR
Sbjct: 134 PALAFEINLS-DFDQRVHRHAAESVQLLAEHGVDLAAHR 171
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 100 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 234
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 100 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 234
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 100 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 234
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 55 SGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKLKA 231
SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P + +
Sbjct: 307 SGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIMDS 360
Query: 232 FQKI 243
+++
Sbjct: 361 SEEL 364
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 16 VKLSTMSTKIIKXSGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN 186
V +++ T++IK A A + + ++ +++ LREL +AKE E N
Sbjct: 536 VAAASLKTELIKEKTALATMKQMEATSSIAAASLRVEIQLALRELEAVQAKEKESRN 592
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 488 HLDKNQQTTIEHKVDTFQFCIQEANGTRSDLRVP 589
H+++ I+ D F + E+ GT+ DLR+P
Sbjct: 1421 HVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLP 1454
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,687,001
Number of Sequences: 37544
Number of extensions: 342503
Number of successful extensions: 826
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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