Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L18
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   168   3e-42
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    29   2.1  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    29   2.1  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    28   6.5  
Z78063-2|CAB01503.2|  275|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  168 bits (409), Expect = 3e-42
 Identities = 79/142 (55%), Positives = 109/142 (76%), Gaps = 1/142 (0%)
 Frame = +1

Query: 40  KIIKXSGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 219
           K++K  G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 220 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 396
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 397 NAILEDLVFPAEIVGKRIRVQV 462
           +A L++LV+PAE+VG+RIRV++
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKL 148



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 458 KLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANGTRSDLRVPRTLF 601
           KLDG ++ KVHLDK+ QT + HK+  F    ++  G       P  +F
Sbjct: 147 KLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDPIF 194


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 504 WFLSKCTLMSCEPSNLNPDALAYDLSREDQVLEDS 400
           WF   C L  C    ++P+ + YD  + + +L+ S
Sbjct: 72  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 106


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 504 WFLSKCTLMSCEPSNLNPDALAYDLSREDQVLEDS 400
           WF   C L  C    ++P+ + YD  + + +L+ S
Sbjct: 84  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 118


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 104 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 214
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 126 VGVGFEFDQRLRDRGLEGIRLSTAXFDDL 40
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical
           protein R07B7.13 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -2

Query: 489 CTLMSCEPSNLNPDALAYDLSREDQVLEDSIVHRGQCP*AWPLLFVSNTSFVAGLRQDLT 310
           C    CE   +NP A+  ++S   ++L+D ++ + +      L   S  + V+ L  DL 
Sbjct: 100 CRFSKCEEVGMNPRAIRAEISSGGKILKDELIAKREPRSKIMLSPKSKENEVSRLISDLN 159

Query: 309 -VSNK-DYMFTTEL 274
            + N+ D +F + L
Sbjct: 160 LIENQIDELFNSSL 173


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 504 WFLSKCTLMSCEPSNLNPDALAYDL-SREDQVLEDSIVHR 388
           WF  KC L  C  + +N   + YD  + +  +L  + V+R
Sbjct: 83  WFCKKCRLAKCSEAGMNSRNIQYDRDANKTSLLSSTNVNR 122


>Z78063-2|CAB01503.2|  275|Caenorhabditis elegans Hypothetical
           protein F45D3.2 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 10  PPVKLSTMSTKIIKXSGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNK 189
           P + ++T +      S   + S  TS+ + LVE +       ++R + +TK +E  +  K
Sbjct: 158 PSLPITTSTITCSSNSSPSSSSITTSVLRTLVEDDDADVHPNKVRPIQVTKEEEDLVRRK 217

Query: 190 -KSIIIYVPMPKLK 228
            + ++  +P+ KL+
Sbjct: 218 TQELLKSMPLQKLE 231


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +1

Query: 337 KTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRIRVQVGRLTAH*GALRQ 498
           K ++  K K  RSR+L++V  A  ++L FP E   KR  V   R  A  G  R+
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPDE--EKRAHVDKLRTKAMRGLRRE 650


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,250,481
Number of Sequences: 27780
Number of extensions: 297993
Number of successful extensions: 873
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)