Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L18
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.36 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.7  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 70  DSFETSISQALVELETNSDLKAQLRE 147
           ++  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 309 VSNKDYMFTTELLFELTN 256
           +SN   M  TELL ELTN
Sbjct: 2   LSNNSSMTQTELLQELTN 19


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 16/78 (20%), Positives = 32/78 (41%)
 Frame = +1

Query: 175 ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 354
           EL   KS +  +P+P  +    +      + +KK +G    F   +        + + + 
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSA 611

Query: 355 KQKRPRSRTLTSVYNAIL 408
           K++R  ++TL  V    L
Sbjct: 612 KKERKATKTLAIVLGVFL 629


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 319 LPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRIRVQVGRL 471
           L   +H+ R  + QK     T+T  Y     +LVF A++  +     +GR+
Sbjct: 83  LNSEAHRIRWESVQKEV---TVTGTYQLTETELVFGAKLAWRNATRCIGRI 130


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 6   FPSRKVVNDEYXDHQXERC*GGFLRDLDLAGAGRTRNQLRPQSPTSG 146
           FP+    +DE  +   +R       D D+AG  + ++++ P    SG
Sbjct: 104 FPNSSSSDDERPNSIHQRASFSLNTDGDIAGLRKKKHKVNPLLMQSG 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,722
Number of Sequences: 438
Number of extensions: 3495
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)