Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L18
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 142 2e-34
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 142 2e-34
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 138 4e-33
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 131 4e-31
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 131 4e-31
At5g36905.1 68418.m04423 RNase H domain-containing protein low s... 29 2.0
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 3.5
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 3.5
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 6.1
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 142 bits (344), Expect = 2e-34
Identities = 73/143 (51%), Positives = 104/143 (72%), Gaps = 2/143 (1%)
Frame = +1
Query: 40 KIIKXSGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 213
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 214 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 393
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 394 YNAILEDLVFPAEIVGKRIRVQV 462
+ A+LED+ +PAEIVGKR R ++
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRL 145
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 546 VYKKLTGREVTFEFP 590
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 455 FKLDGSQLIKVHLDKNQQTTIEHKVDT 535
++LDG++++KV LD + E+K++T
Sbjct: 143 YRLDGTKIMKVFLDSKLKNDTEYKLET 169
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 142 bits (344), Expect = 2e-34
Identities = 73/143 (51%), Positives = 104/143 (72%), Gaps = 2/143 (1%)
Frame = +1
Query: 40 KIIKXSGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 213
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 214 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 393
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 394 YNAILEDLVFPAEIVGKRIRVQV 462
+ A+LED+ +PAEIVGKR R ++
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRL 145
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 546 VYKKLTGREVTFEFP 590
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 455 FKLDGSQLIKVHLDKNQQTTIEHKVDT 535
++LDG++++KV LD + E+K++T
Sbjct: 143 YRLDGTKIMKVFLDSKLKNDTEYKLET 169
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 138 bits (333), Expect = 4e-33
Identities = 74/143 (51%), Positives = 101/143 (70%), Gaps = 2/143 (1%)
Frame = +1
Query: 40 KIIKXSGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 213
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 214 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 393
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 394 YNAILEDLVFPAEIVGKRIRVQV 462
+ A+LED+ FPAEIVGKR R ++
Sbjct: 123 HEAMLEDVAFPAEIVGKRTRYRL 145
Score = 31.5 bits (68), Expect = 0.49
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +2
Query: 455 FKLDGSQLIKVHLDKNQQTTIEHKVDT 535
++LDGS+++KV LD ++ E+K++T
Sbjct: 143 YRLDGSKIMKVFLDAKEKNNTEYKLET 169
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 546 VYKKLTGREVTFEFP 590
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 131 bits (316), Expect = 4e-31
Identities = 68/143 (47%), Positives = 100/143 (69%), Gaps = 2/143 (1%)
Frame = +1
Query: 40 KIIKXSGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 213
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 214 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 393
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 394 YNAILEDLVFPAEIVGKRIRVQV 462
+ AIL+D+V PAEIVGKR R ++
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRL 145
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 540 SSVYKKLTGREVTFEFP 590
S+VYKKLTG++V FEFP
Sbjct: 171 SAVYKKLTGKDVVFEFP 187
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 455 FKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANG 565
++LDG++++KV LD ++ E+KV+ F ++ G
Sbjct: 143 YRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 131 bits (316), Expect = 4e-31
Identities = 68/143 (47%), Positives = 100/143 (69%), Gaps = 2/143 (1%)
Frame = +1
Query: 40 KIIKXSGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 213
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 214 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 393
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 394 YNAILEDLVFPAEIVGKRIRVQV 462
+ AIL+D+V PAEIVGKR R ++
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRL 145
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 540 SSVYKKLTGREVTFEFP 590
S+VYKKLTG++V FEFP
Sbjct: 171 SAVYKKLTGKDVVFEFP 187
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 455 FKLDGSQLIKVHLDKNQQTTIEHKVDTFQFCIQEANG 565
++LDG++++KV LD ++ E+KV+ F ++ G
Sbjct: 143 YRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
>At5g36905.1 68418.m04423 RNase H domain-containing protein low
similarity to reverse transcriptase [Arabidopsis
thaliana] GI:976278; contains Pfam profile PF00075:
RNase H
Length = 633
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 462 WTAHSSLRCT*TKTNRLLLNIKWTPSSSVYKKL 560
W AH +LR + + + ++IKWTP S+ + KL
Sbjct: 430 WIAHLNLRRGAMRGSEVEMSIKWTPPSTGWFKL 462
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 354 QTKEATLKDIDLCVQCYPRGLG 419
Q +E++LK CV+CYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 354 QTKEATLKDIDLCVQCYPRGLG 419
Q +E++LK CV+CYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +1
Query: 175 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 324
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,109
Number of Sequences: 28952
Number of extensions: 282656
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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