Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L17
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    28   5.6  
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411...    27   9.9  

>03_06_0769 + 36134298-36134356,36134740-36134919,36134975-36135007,
            36135008-36135128,36135227-36135266,36135811-36135863,
            36135937-36135998,36136354-36136506,36136949-36137160,
            36137480-36138972,36140560-36141483,36141734-36142043,
            36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 531  GSIIKTNISTVAAGRSQHASATFIKSSPFYTKLVFV 638
            GS++KT IS   +G S  AS +F   SPF  + V V
Sbjct: 1233 GSMLKTLISRDDSGSSSKASRSFSLLSPFRRQKVIV 1268


>03_05_0487 +
           24838620-24838967,24840526-24840747,24840819-24841109,
           24841316-24841513,24841641-24841705,24841788-24841874,
           24841988-24842108,24842200-24842244,24842321-24842458,
           24842571-24842643,24842723-24842799,24842882-24842989,
           24843108-24843224,24843524-24843679,24843780-24843881,
           24844036-24844161,24844237-24844314,24844390-24844485,
           24844592-24844707,24844781-24844850,24844930-24844983,
           24845062-24845205,24845297-24845596,24845780-24846202,
           24846316-24846429
          Length = 1222

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 219 NNLXVIGCRLGFLNGDSVSMSQSELKSSGFLNTLF 115
           N +  I C  G+   DSV M+QS +   GF  +LF
Sbjct: 817 NAIVAIACYSGYNQEDSVIMNQSSI-DRGFFRSLF 850


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,381,781
Number of Sequences: 37544
Number of extensions: 282880
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)