Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L16
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 7e-04
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.77
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.0
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 28 1.0
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 3.1
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 27 3.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 25 7.2
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 7.2
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 38.7 bits (86), Expect = 7e-04
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDRPDGV 179
GDW C P CG NF RR SC+RC+ P V
Sbjct: 345 GDWNC--PMCGFSNFQRRTSCFRCSFPGPTHV 374
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 78 NDGDWICSDPSCGNINFARRASCYRCN 158
+ GDW+C CG NF RR++C RCN
Sbjct: 560 DQGDWLCE---CGFTNFRRRSNCLRCN 583
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDR 167
GDW C CG NFA+ C RC R
Sbjct: 447 GDWKCGSEGCGYHNFAKNVCCLRCGASR 474
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 28.7 bits (61), Expect = 0.77
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 90 WICSDPSCGNINFARRASCYRCNKDRPDGVKPS 188
W C SC N F R +C RCN D + V+P+
Sbjct: 8 WYCH--SCSN-EFQRPGNCPRCNSDFVEMVEPN 37
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 28.3 bits (60), Expect = 1.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +3
Query: 255 DDWQCNKCANVNWARRQTCNVCNAPK 332
+ W C C +N++ R++C C P+
Sbjct: 157 EGWCCQNCDILNYSYRESCFKCRVPR 182
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 90 WICSDPSCGNINFARRASCYRCNKDR 167
W C + C +N++ R SC++C R
Sbjct: 159 WCCQN--CDILNYSYRESCFKCRVPR 182
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 363 GGGYNERGVVXYRRREHSSDDEYDEFGXKKRKRKSEQ 473
G GY + G + + +S +D+ +E G RKRK +
Sbjct: 67 GAGYVDNGYDEWDQSHYSDEDDENEKGSSGRKRKKSK 103
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 417 SDDEYDEFGXKKRKRKSEQQDKNKTQA 497
SDDE + G KK+K + +++ K+K ++
Sbjct: 932 SDDEEKQSGKKKKKDRKKRKSKSKQES 958
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 408 EHSSDDEYDEFGXKKRKRKSEQQDKNKTQAHQT 506
E+ + +E G KK+K+K + K KT QT
Sbjct: 34 ENDAAEEGASNGEKKKKKKKKSSKKKKTPQEQT 66
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 295 LGVKRVMCAMHQNLVKLKLVPVTAAVIMSAELXSTDVVSIL 417
LG++ + C +HQ LV ++ T + S + T V+IL
Sbjct: 1321 LGIEILKCIIHQGLVNPRMCFSTIIALESNAIKETREVAIL 1361
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 441 GXKKRKRKSEQQDKNKTQAH 500
G KKRKRK Q+K + + H
Sbjct: 21 GNKKRKRKERGQNKRREKIH 40
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +3
Query: 288 NWA-RRQTCNVCNAPKFGEVEARTGYGGGYNER 383
NW R+QTC +C G + TG N R
Sbjct: 339 NWLERQQTCPICRRSVIGNQSSPTGIPASPNVR 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,476
Number of Sequences: 5004
Number of extensions: 43481
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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