Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L16
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 33 0.20
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20) 29 3.3
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7) 29 4.4
SB_3218| Best HMM Match : Ribosomal_S25 (HMM E-Value=0.65) 29 4.4
SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
>SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/62 (53%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Frame = +3
Query: 258 DWQCN--KCANVNWARRQTCNVCNAPKFGEVEARTGYGGGYNERGVVXYRRREHSSDDEY 431
DW C KC N+N+ARR +CN C GYGGGYNERG V Y+ +E SDDEY
Sbjct: 12 DWVCPDPKCGNMNFARRSSCNRCGR----------GYGGGYNERGTVEYKPKE-ESDDEY 60
Query: 432 DE 437
DE
Sbjct: 61 DE 62
Score = 59.3 bits (137), Expect = 3e-09
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +3
Query: 72 KMNDGDWICSDPSCGNINFARRASCYRCNK 161
K++DGDW+C DP CGN+NFARR+SC RC +
Sbjct: 7 KLSDGDWVCPDPKCGNMNFARRSSCNRCGR 36
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 33.9 bits (74), Expect = 0.12
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 6/144 (4%)
Frame = +3
Query: 90 WICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNADDWQC 269
W C+ SCG +N A+ C+ C+ D+ KP+ K + ++ ++ WQC
Sbjct: 3008 WDCA--SCGCVNSAKSHQCFGCSLDKVGLEKPAPKSMIQDL-------------SEKWQC 3052
Query: 270 NKCANVNWARRQTCNVC------NAPKFGEVEARTGYGGGYNERGVVXYRRREHSSDDEY 431
+ C + R C C +P E R G +E+ + S+ Y
Sbjct: 3053 DSCYVHHPDERGFCLACGNSRYKGSPPSDEQSKRLQQPEGTDEQDAPNSPEKAVQSEPWY 3112
Query: 432 DEFGXKKRKRKSEQQDKNKTQAHQ 503
+ + ++ E+++ + H+
Sbjct: 3113 WTWLFSRPPQQPEEKESEEANEHE 3136
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 258 DWQCNKCANVNWARRQTCNVCNAPKFGEVEARTGYGGGYNERG 386
+W C C N A +TC C PK G + T + G ++G
Sbjct: 2118 EWDCETCLVRNTAESKTCPACQTPKPGATQ--TSHLTGVTKQG 2158
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNAD-- 257
G W C +C N A +C C +P G KP+ + + S GLFN
Sbjct: 1726 GSWECG--TCMIQNKADVTTCVACEASKP-GSKPAPS--------ATSSTSNGLFNKQAP 1774
Query: 258 ---DWQCNKCANVNWARRQTCNVCNAPK 332
W C+ C N C C +PK
Sbjct: 1775 PTGSWTCDTCWISNKEADSRCAACQSPK 1802
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/94 (26%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Frame = +3
Query: 81 DGDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNAD- 257
+G W C +C N C C +P G + K S+ F
Sbjct: 1830 EGSWECD--TCMVNNKGSDTKCVACETAKP-GANSTASKTPAFGASSSTFPVLEKFAPPP 1886
Query: 258 -DWQCNKCANVNWARRQTCNVCNAPKFGEVEART 356
W C+ C VN A C C PK G A T
Sbjct: 1887 GSWTCDTCMIVNKAEHLKCLACETPKPGAKPAET 1920
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 165 RPDGVKPSKKKLGTEIGKSAAEKSRGL--FNAD--DWQCNKCANVNWARRQTCNVCNAPK 332
+P VKPS+ ++ KS+A + L F W+C C N A TC C A K
Sbjct: 1692 KPASVKPSENSTRSDDKKSSAPATNLLEAFRPPPGSWECGTCMIQNKADVTTCVACEASK 1751
Query: 333 FGEVEA 350
G A
Sbjct: 1752 PGSKPA 1757
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 366 GGYNERGVVXYRRREHSSDDEYDEFGXKKRKRKSEQQDKNKTQ 494
G + + RR+ SS E D + K+R+ +EQ++++K++
Sbjct: 883 GSVGSKADIEDNRRKRSSSRESDRYSIKRRRHDNEQEERSKSK 925
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +3
Query: 282 NVNWARRQTCNVCNAPKFGEVEARTGYGGGYNERGVVXYRRREHSSDDEYDEFGXKKRKR 461
+V W R +C + G V + GGG E+ V +++ +++ D D FG + +
Sbjct: 313 DVKWCPRNPAMICTSSFDGHVSCFSLMGGGATEQAV--EQQKVNNAFDVDDPFGSQLNQS 370
Query: 462 KSEQQDKNKT 491
+QQ T
Sbjct: 371 PPQQQPAETT 380
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 90 WICSDPSCGNINFARRASCYRCNKDRPD 173
W+C P C IN R C C ++RP+
Sbjct: 259 WVC--PQCTLINIPTRPGCAMCGEERPE 284
>SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 255 DDWQCNKCANVNWARRQTCNVC 320
D W+C+KC +N + C VC
Sbjct: 156 DSWECDKCKTMNHPMTRRCVVC 177
>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
Length = 744
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 360 YGGGYNERGVVXYRRREHSSDDEYD 434
Y GG N+ V+ + H DD+YD
Sbjct: 196 YAGGDNDDDVILMKAESHDDDDDYD 220
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 357 GYGGGYNERGVVXYRRREHSSD--DEYDEFGXKKRKRKSEQQD 479
GY GYN+ R E+ D D D +G R +S +D
Sbjct: 1382 GYSNGYNDNQPKEKRSSEYQDDPRDNRDSYGDYSRSSRSSYED 1424
>SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7)
Length = 286
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 366 GGYNERGVVXYRRREHSSDDEYDEFGXKKRKRKSEQQDKNKT 491
GG + G V +R+++S E + KK RKS DK ++
Sbjct: 4 GGISIEGNVSSNQRDNNSQPEEAQIHSKKEPRKSSGSDKMRS 45
>SB_3218| Best HMM Match : Ribosomal_S25 (HMM E-Value=0.65)
Length = 290
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 405 REHSSDDEYDEFGXKKRKRKSEQQDKNK 488
R+ ++ +EF K+K+K++Q++KNK
Sbjct: 172 RDQIESEQSEEFVKSKKKKKNKQKEKNK 199
>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1082
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 399 RRREHSSDDEYDEFGXKKRKRKSEQQDKNKT 491
RRRE D+ + K++KR+ EQ+DK +
Sbjct: 459 RRRESGDTDDSVKARKKEKKRREEQRDKESS 489
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 261 WQCNKCANVNWARRQ--TCNVCNAPKFGEVE 347
+QC+KC ++N+ R CN C K+ + +
Sbjct: 1881 YQCHKCRSINYDERDPFLCNACGFCKYAKFD 1911
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,053,012
Number of Sequences: 59808
Number of extensions: 333165
Number of successful extensions: 1216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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