Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L16
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 106 1e-23
At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protei... 55 5e-08
At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protei... 54 6e-08
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 54 1e-07
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 54 1e-07
At4g28990.1 68417.m04143 RNA-binding protein-related contains we... 52 3e-07
At3g15680.1 68416.m01987 zinc finger (Ran-binding) family protei... 50 1e-06
At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protei... 49 2e-06
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei... 45 4e-05
At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protei... 45 5e-05
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei... 43 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 41 6e-04
At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protei... 38 0.004
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei... 38 0.006
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 31 0.51
At3g29075.1 68416.m03637 glycine-rich protein 31 0.67
At5g53800.1 68418.m06685 expressed protein 30 1.2
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 30 1.5
At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase fa... 29 2.0
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 28 4.7
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 28 4.7
At5g66780.1 68418.m08418 expressed protein 28 6.2
At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putat... 27 8.2
At5g17010.3 68418.m01994 sugar transporter family protein simila... 27 8.2
At5g17010.2 68418.m01993 sugar transporter family protein simila... 27 8.2
At5g17010.1 68418.m01992 sugar transporter family protein simila... 27 8.2
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 106 bits (254), Expect = 1e-23
Identities = 64/155 (41%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Frame = +3
Query: 81 DGDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGT-----------EIGKSAA 227
DGDW+C + SC N+NFA R C RC RP G G GK +
Sbjct: 136 DGDWMCPNTSCTNVNFAFRGVCNRCGTARPAGASGGSMGAGRGRGRGGGADGGAPGKQPS 195
Query: 228 EKSRGLFNADDWQCNKCANVNWARRQTCNVCNAPKFGEVE--ARTGYGGGYNERG----- 386
GLF +DW C C NVNWA+R CN+CN K G+ E R G GGGY E
Sbjct: 196 GAPTGLFGPNDWACPMCGNVNWAKRLKCNICNTNKPGQNEGGVRGGRGGGYKELDEQELE 255
Query: 387 VVXYRRREHSSDD--EYDEFGXKKRKR--KSEQQD 479
RRRE DD YDEFG K+K K+ Q D
Sbjct: 256 ETKRRRREAEEDDGEMYDEFGNLKKKYRVKTNQAD 290
>At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protein
similar to ZIS2 [Homo sapiens] GI:4191329; contains Pfam
profile PF00641: Zn-finger in Ran binding protein and
others
Length = 288
Score = 54.8 bits (126), Expect = 5e-08
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +3
Query: 81 DGDWICSDPSCGNINFARRASCY--RCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNA 254
D DW C P+CGN+NF+ R C +CN +P G++ G S+ + S+
Sbjct: 195 DNDWTC--PNCGNVNFSFRTVCNMRKCNTPKP----------GSQQGGSSDKISKQNAPE 242
Query: 255 DDWQCNKCANVNWARRQTCN--VCNAPKFGE 341
W+C+ C N+N+ R CN C A K G+
Sbjct: 243 GSWKCDNCGNINYPFRSKCNRQNCGADKPGD 273
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +3
Query: 219 SAAEKSR--GLFNADDWQCNKCANVNWARRQTCNV--CNAPK 332
SAA+++R G DDW C C NVN++ R TCN+ C P+
Sbjct: 10 SAAKRARTDGGRREDDWICPSCGNVNFSFRTTCNMRNCTQPR 51
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +3
Query: 81 DGDWICSDPSCGNINFARRASC--YRCNKDRP 170
+ DWIC PSCGN+NF+ R +C C + RP
Sbjct: 23 EDDWIC--PSCGNVNFSFRTTCNMRNCTQPRP 52
>At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 170
Score = 54.4 bits (125), Expect = 6e-08
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKK--LGTEIGKSAAEKSRGLFNAD 257
GDW C C ++NF RR SC RC + RP G+ G + S +
Sbjct: 5 GDWNCR--LCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPG 62
Query: 258 DWQCN--KCANVNWARRQTCNVCNAPK 332
DW CN C N+A R +C C A K
Sbjct: 63 DWYCNLGDCGTHNFANRSSCFKCGAAK 89
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDRPD---------------GVKPSKKKLGTEIGK 218
GDW C+ CG NFA R+SC++C + + V P + G
Sbjct: 62 GDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSS 121
Query: 219 SAAEKS-RGLFNADDWQCNK--CANVNWARRQTCNVCNAPK 332
S + R + + DW C + C N+A R C CNAPK
Sbjct: 122 SGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPK 162
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDRPDGVKP 185
GDWIC C NFA R+ C+RCN + +P
Sbjct: 135 GDWICPRSGCNEHNFASRSECFRCNAPKELATEP 168
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 81 DGDWICSDPSCGNINFARRASCYRCNKDRPDGVKP-SKKKLGTEIGKSAAEKSRG 242
DGDW C +PSCGN+NFARR C +C P G + + G + + RG
Sbjct: 85 DGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGGYSRGGGDSDRG 139
Score = 40.7 bits (91), Expect = 8e-04
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 201 GTEIGKSAAEKSRGLFNADDWQCNK--CANVNWARRQTCNVCNAPKFGEVEARTGYGGGY 374
G + G S G DW+C C NVN+ARR CN C A A +G G
Sbjct: 68 GYQGGDRGGRGSGGGGRDGDWRCPNPSCGNVNFARRVECNKCGA------LAPSGTSSGA 121
Query: 375 NERGVVXYRRREHSSD 422
N+RG Y R SD
Sbjct: 122 NDRGGGGYSRGGGDSD 137
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 81 DGDWICSDPSCGNINFARRASCYRCNKDRPDGVKP-SKKKLGTEIGKSAAEKSRG 242
DGDW C +PSCGN+NFARR C +C P G + + G + + RG
Sbjct: 85 DGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGGYSRGGGDSDRG 139
Score = 40.7 bits (91), Expect = 8e-04
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 201 GTEIGKSAAEKSRGLFNADDWQCNK--CANVNWARRQTCNVCNAPKFGEVEARTGYGGGY 374
G + G S G DW+C C NVN+ARR CN C A A +G G
Sbjct: 68 GYQGGDRGGRGSGGGGRDGDWRCPNPSCGNVNFARRVECNKCGA------LAPSGTSSGA 121
Query: 375 NERGVVXYRRREHSSD 422
N+RG Y R SD
Sbjct: 122 NDRGGGGYSRGGGDSD 137
>At4g28990.1 68417.m04143 RNA-binding protein-related contains weak
similarity to Swiss-Prot:Q01844 RNA-binding protein EWS
(EWS oncogene)(Ewing sarcoma breakpoint region 1
protein) [Homo sapiens]
Length = 347
Score = 52.0 bits (119), Expect = 3e-07
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3
Query: 81 DGDWICSDPSCGNINFARRASCYRCNKDR 167
+GDW C DP C N+NFARR SCY+C + R
Sbjct: 155 EGDWYCLDPLCRNLNFARRESCYKCKRHR 183
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 258 DWQCNK--CANVNWARRQTCNVCNAPKF 335
DW C C N+N+ARR++C C ++
Sbjct: 157 DWYCLDPLCRNLNFARRESCYKCKRHRY 184
>At3g15680.1 68416.m01987 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 164
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCN--KDRP-----DGVKPSKKKLGTEIGKS--AAEKS 236
GDW C+ +CG NFA R++C++C KD G +I +S
Sbjct: 63 GDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGG 122
Query: 237 RGLFNADDWQCNK--CANVNWARRQTCNVCNAPK 332
R + + DW C + C N+A R C CNAP+
Sbjct: 123 RSSWKSGDWICTRIGCNEHNFASRMECFRCNAPR 156
Score = 49.2 bits (112), Expect = 2e-06
Identities = 35/101 (34%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDR--PDGVKP-SKKKLGTEIGKSAAEKSRGLFNA 254
GDW C SC ++NF RR SC RC R P GV G + +
Sbjct: 5 GDWNCR--SCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRP 62
Query: 255 DDWQC--NKCANVNWARRQTCNVCNAPKFGEVEARTGYGGG 371
DW C C N+A R TC C G + TG GGG
Sbjct: 63 GDWYCTVGNCGTHNFASRSTCFKC-----GTFKDETGAGGG 98
>At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protein
contains Pfam profile PF00641: Zn-finger in Ran binding
protein and others
Length = 137
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNADDW 263
GDW C +CG+ N+A R SCYRC + + + G A G + DW
Sbjct: 50 GDWYCGALNCGSHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGNDGAACPPG-WKTGDW 108
Query: 264 QCNK--CANVNWARRQTCNVCNAPK 332
C + C N+A R C C +
Sbjct: 109 VCPRVGCGVHNYASRAECFKCKTTR 133
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 258 DWQCNKCANVNWARRQTCNVCNAPKFGEVEART 356
DW C C + N+ +R++C C PKFG V+ T
Sbjct: 7 DWLCGACQHANFKKRESCQKCGYPKFGGVDVST 39
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDRPDG 176
GDW+C CG N+A RA C++C R G
Sbjct: 106 GDWVCPRVGCGVHNYASRAECFKCKTTRDYG 136
>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 455
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/82 (31%), Positives = 35/82 (42%)
Frame = +3
Query: 75 MNDGDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNA 254
+ +GDW+C P C +NF R SC +C P KK I E +G
Sbjct: 335 VKEGDWLC--PECSFLNFTRNQSCLKCKAKGP------KKTSMVNI----VEMKKG---- 378
Query: 255 DDWQCNKCANVNWARRQTCNVC 320
DW C C +N+A + C C
Sbjct: 379 -DWNCTGCGYMNFASNKQCREC 399
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 159 KDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNADDWQCNKCANVNWARRQTCNVCN 323
K R D +PS + ++++ R L++AD W C KC VN+AR + C CN
Sbjct: 272 KSRND--EPSHRVAFKSRNDESSQRDRPLYSAD-WACPKCDFVNFARNERCRECN 323
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +3
Query: 69 RKMNDGDWICSDPSCGNINFARRASCYRCNK--DRPDGVKPSKKKLGTEIGKSAAEKSRG 242
R + DW C P C +NFAR C CN+ DR +P AA G
Sbjct: 296 RPLYSADWAC--PKCDFVNFARNERCRECNEVADR----RP-----------VAAVVKEG 338
Query: 243 LFNADDWQCNKCANVNWARRQTCNVCNA 326
DW C +C+ +N+ R Q+C C A
Sbjct: 339 -----DWLCPECSFLNFTRNQSCLKCKA 361
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/87 (28%), Positives = 33/87 (37%)
Frame = +3
Query: 72 KMNDGDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFN 251
+M GDW C+ CG +NFA C C + R K+ AE
Sbjct: 374 EMKKGDWNCT--GCGYMNFASNKQCRECREQR---------------HKTLAEPG----- 411
Query: 252 ADDWQCNKCANVNWARRQTCNVCNAPK 332
DW+C C VN+ R C C +
Sbjct: 412 --DWECPSCDFVNFRRNDACKKCECKR 436
Score = 34.7 bits (76), Expect = 0.054
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDRP 170
GDW C PSC +NF R +C +C RP
Sbjct: 411 GDWEC--PSCDFVNFRRNDACKKCECKRP 437
>At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 268
Score = 44.8 bits (101), Expect = 5e-05
Identities = 26/84 (30%), Positives = 36/84 (42%)
Frame = +3
Query: 81 DGDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNADD 260
+GDW C C N N+A R+ C RC + R + + + S+ L D
Sbjct: 6 EGDWECL--GCRNRNYAFRSFCNRCKQPR------------LIMDNNTSPNSKWLPRIGD 51
Query: 261 WQCNKCANVNWARRQTCNVCNAPK 332
W C C N N+A R+ C C K
Sbjct: 52 WICTGCTNNNYASREKCKKCGQSK 75
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 66 VRKMNDGDWICSDPSCGNINFARRASCYRCNKDR 167
V++ DGDW+C++ C N N+A RA C RC R
Sbjct: 224 VKQWRDGDWMCTN--CKNHNYASRAECNRCKTTR 255
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 258 DWQCNKCANVNWARRQTCNVCNAPK 332
DW C C N N+A R CN C +
Sbjct: 231 DWMCTNCKNHNYASRAECNRCKTTR 255
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 69 RKMNDGDWICSDPSCGNINFARRASCYRCNKDRP 170
++ GDWIC CG N++ R C +CN+ P
Sbjct: 124 KEWRSGDWICR---CGFHNYSSRIQCKKCNEIAP 154
>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 758
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/87 (28%), Positives = 39/87 (44%)
Frame = +3
Query: 72 KMNDGDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFN 251
+M GDWICS C +NFAR C++C++ RP K++L
Sbjct: 274 EMKRGDWICS--RCSGMNFARNVKCFQCDEARP------KRQL----------------T 309
Query: 252 ADDWQCNKCANVNWARRQTCNVCNAPK 332
+W+C +C N+ R C C+ +
Sbjct: 310 GSEWECPQCDFYNYGRNVACLRCDCKR 336
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 42 CDEXRIFIVRKMNDGDWICSDPSCGNINFARRASCYRCNKDRP 170
CDE R R++ +W C P C N+ R +C RC+ RP
Sbjct: 299 CDEARP--KRQLTGSEWEC--PQCDFYNYGRNVACLRCDCKRP 337
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 41.1 bits (92), Expect = 6e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 87 DWICSDPSCGNINFARRASCYRCNKDR 167
DWIC+ CG INFARR SC++CN+ +
Sbjct: 407 DWICT--ICGCINFARRTSCFQCNEPK 431
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 234 SRGLFNADDWQCNKCANVNWARRQTCNVCNAPK 332
SR + DW C C +N+ARR +C CN PK
Sbjct: 399 SRNMIVPTDWICTICGCINFARRTSCFQCNEPK 431
>At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 466
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +3
Query: 84 GDWICSDPSCGNINFARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNADDW 263
GDW C++ C +NFA+ C RC+ + +K K++ +K DW
Sbjct: 236 GDWYCTE--CKFLNFAKNIRCLRCDVFSEERLKQLKEE----------QKDHLPLKKGDW 283
Query: 264 QCNKCANVNWARRQTCNVC 320
C C +N+++ C C
Sbjct: 284 ICQTCNFLNFSKNTRCLRC 302
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 66 VRKMNDGDWICSDPSCGNINFARRASCYRCNKDR 167
+R++N G+W C SC INF R + C +C+ R
Sbjct: 308 LRQINPGEWECE--SCNYINFRRNSICLKCDHKR 339
>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
contains Pfam PF00641: Zn-finger in Ran binding protein
and others; contains Prosite PS00018: EF-hand
calcium-binding domain; similar to Zinc finger protein
265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
musculus}
Length = 849
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 72 KMNDGDWICSDPSCGNINFARRASCYRCNKDRP 170
+M GDW+C P C +NFA+ C +C+ RP
Sbjct: 369 EMKKGDWLC--PKCDFMNFAKNTICLQCDAKRP 399
Score = 34.3 bits (75), Expect = 0.072
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 69 RKMNDGDWICSDPSCGNINFARRASCYRCNKDRP-DGVKPSK 191
R++ G+W C P C +N+ R +C+ C+ RP D + +K
Sbjct: 401 RQLLPGEWEC--PECNFLNYRRNMACFHCDCKRPADAILENK 440
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 159 KDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNADDWQCNKCANVNWARRQTCNVCNAPK 332
K P VK +G+ E +G DW C KC +N+A+ C C+A +
Sbjct: 346 KRAPPKVKQPPPTPKRRVGRDDVEMKKG-----DWLCPKCDFMNFAKNTICLQCDAKR 398
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 249 NADDWQCNKCANVNWARRQTCNVCNAPKFG 338
N + + C+KCA + TC VCN P G
Sbjct: 100 NCNHYFCDKCALKHHTENDTCFVCNEPTLG 129
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 405 REHSSDDEYDEFGXKKRKRKSEQQDKNKTQAH 500
+EH DD+YDE KK+K+ D+ K + H
Sbjct: 194 KEHHDDDDYDE--KKKKKKDYNDDDEKKKKKH 223
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Frame = +3
Query: 129 ARRASCYRCNKDRPDGVKPSKKKLGTEIGKSAAEKSRGLFNADDWQCNKCANVNWARRQT 308
+RR R KD D S + G+E K +SR D + + +RR+
Sbjct: 45 SRRRESKRRTKDGNDSGSESGLESGSESEKEERRRSR----KDRGKRKSDRKSSRSRRRR 100
Query: 309 CNVCNAPKFGEVEARTGYGGGYNERGVVXYRRREHSSDDEYDEFGXKKRKRKSEQQDK-N 485
+ ++ E E+ + Y RRR+ + +E +KR+R+ + + K N
Sbjct: 101 RDYSSSSSDSESESESEYSDSEESESEDERRRRKRKRKEREEEEKERKRRRREKDKKKRN 160
Query: 486 KT 491
K+
Sbjct: 161 KS 162
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 261 WQCNKCANVNWARRQT--CNVCNAPKFGEVE 347
+QC +C N+N+ + CN C K+G E
Sbjct: 3486 YQCRQCRNINYENLDSFLCNECGYSKYGRFE 3516
>At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase
family protein contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 441
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 252 ADDWQCNKCANVNWA-RRQTCNVCNAP 329
+ W CNKC +N A ++ C +C AP
Sbjct: 17 SSSWSCNKCTFLNSASQKLNCMICLAP 43
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +3
Query: 264 QCNKCANVNWARRQTCNVCNAPKFGEVEAR 353
+C +C W ++TC VC+ G R
Sbjct: 175 ECYRCGKAKWENKETCIVCDEKYCGNCVLR 204
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +3
Query: 264 QCNKCANVNWARRQTCNVCNAPKFGEVEAR 353
+C +C W ++TC VC+ G R
Sbjct: 175 ECYRCGKAKWENKETCIVCDEKYCGNCVLR 204
>At5g66780.1 68418.m08418 expressed protein
Length = 121
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 357 GYGGGYNERGVVXYRRREHSSDDEYDEFGXKKRKRKSEQQDKNKTQAH 500
G+GG Y + H + +YD+ + K K ++ +N+TQ+H
Sbjct: 75 GFGGIYGGNQTLQKENEIHENHPDYDKTQGSESKEK--EKARNQTQSH 120
>At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 182
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 483 SCLVVPICVYVSXFQIRHIHHRKNA 409
SC+V P+ ++ S QI+H RK +
Sbjct: 40 SCIVAPLSLFTSQSQIKHSSSRKTS 64
>At5g17010.3 68418.m01994 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 440
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 434 VIFIIGRMLTTSVLYNSALIITAAVTGTSFNFTKFWCIAHITRLTPSPIHIGTFIAL 264
+++++G ++T S LII + G S +I PSPI G ++L
Sbjct: 130 LLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIR-GQLVSL 185
>At5g17010.2 68418.m01993 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 440
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 434 VIFIIGRMLTTSVLYNSALIITAAVTGTSFNFTKFWCIAHITRLTPSPIHIGTFIAL 264
+++++G ++T S LII + G S +I PSPI G ++L
Sbjct: 130 LLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIR-GQLVSL 185
>At5g17010.1 68418.m01992 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 503
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 434 VIFIIGRMLTTSVLYNSALIITAAVTGTSFNFTKFWCIAHITRLTPSPIHIGTFIAL 264
+++++G ++T S LII + G S +I PSPI G ++L
Sbjct: 129 LLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIR-GQLVSL 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,926
Number of Sequences: 28952
Number of extensions: 229066
Number of successful extensions: 873
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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