Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L14
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      28   0.077
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      28   0.077
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 0.077
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 90  NGFKMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
           NG K     K+P++A++L++   R+K+  +    +   I +  G  W ++
Sbjct: 471 NGEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHAL 520


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 0.077
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 90  NGFKMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
           NG K     K+P++A++L++   R+K+  +    +   I +  G  W ++
Sbjct: 363 NGEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHAL 412


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 113 FICHFKSVKYVFLYDRSVLFLLLRRE 36
           FI  F SV    L+  SVLF+LL +E
Sbjct: 297 FIYMFVSVWKCLLFFVSVLFILLVKE 322


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 113 FICHFKSVKYVFLYDRSVLFLLLRRE 36
           FI  F SV    L+  SVLF+LL +E
Sbjct: 297 FIYMFVSVWKCLLFFVSVLFILLVKE 322


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 113 FICHFKSVKYVFLYDRSVLFLLLRRE 36
           FI  F SV    L+  SVLF+LL +E
Sbjct: 297 FIYMFVSVWKCLLFFVSVLFILLVKE 322


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 113 FICHFKSVKYVFLYDRSVLFLLLRRE 36
           FI  F SV    L+  SVLF+LL +E
Sbjct: 297 FIYMFVSVWKCLLFFVSVLFILLVKE 322


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,088
Number of Sequences: 336
Number of extensions: 2049
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)