Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L14
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 54 7e-08
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 53 2e-07
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 53 2e-07
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 48 8e-06
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 47 1e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 46 3e-05
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 36 0.019
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 36 0.019
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 36 0.019
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 36 0.019
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 36 0.019
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 36 0.033
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 36 0.033
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 36 0.033
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 36 0.033
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 36 0.033
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 32 0.31
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 32 0.31
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMY--DKSEWXXXXX 272
K ++PKR +AY++W N+ R+ +K+D L ++AKKAG W+SM DK EW
Sbjct: 556 KDPNEPKRATTAYIIWFNANRNSMKEDGDTL--GDVAKKAGAKWKSMSADDKKEWNDKAA 613
Query: 273 XXXXQYIVDLESFNAN 320
+Y +++ + N
Sbjct: 614 QDKARYEAEMKEYKKN 629
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSEWXXXXXXX 278
K + PKR MSA+ W+ R +IK P + V ++AK AG W + DKS W
Sbjct: 23 KDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADD 80
Query: 279 XXQYIVDLESF 311
+Y VD+ ++
Sbjct: 81 KKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSEWXXXXXXX 278
K + PKR MSA+ W+ R +IK P + V ++AK AG W + DKS W
Sbjct: 23 KDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADD 80
Query: 279 XXQYIVDLESF 311
+Y VD+ ++
Sbjct: 81 KKRYEVDIANY 91
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMY--DKSEWXXXXX 272
K + PKR SAY+ W ++R+++K+D V ++AKK G W++M DK +W
Sbjct: 551 KDPNAPKRATSAYMQWFLASRNELKEDGD--SVADVAKKGGAKWKTMSSDDKKKWEEKAE 608
Query: 273 XXXXQYIVDLESFNAN 320
+Y +++ + N
Sbjct: 609 EDKSRYEKEMKEYRKN 624
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/55 (32%), Positives = 35/55 (63%)
Frame = +3
Query: 90 NGFKMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
+G K D+ KRPM+A+++W R K+ +NP + +EI+K+ G W+ + ++ +
Sbjct: 52 DGKKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEK 106
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = +3
Query: 108 DKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
D KRPM+A+++W R K+ DNP + +EI+K+ G W+ + ++ +
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEK 94
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
K ++ KRPM+A+++W R KI + P + EI+K+ G WRS+ D+ +
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEK 139
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 117 KRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 179 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 219
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 117 KRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 176 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 216
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 117 KRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 282 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 322
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 117 KRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 370
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 117 KRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
KRPM+A+++W R KI P + + I+K G W+ M
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 370
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 114 PKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWR 233
PKR +SA+ + R +I+ +P KV ++A++ G++W+
Sbjct: 134 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 173
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 165 KIKDDNPXLKVTEIAKKAGEIWRSMYD 245
K K N ++VTEI+KK E W++M D
Sbjct: 63 KKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 114 PKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWR 233
PKR +SA+ + R +I+ +P KV ++A++ G++W+
Sbjct: 133 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 172
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 165 KIKDDNPXLKVTEIAKKAGEIWRSMYD 245
K K N ++VTEI+KK E W++M D
Sbjct: 64 KKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 114 PKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWR 233
PKR +SA+ + R +I+ +P KV ++A++ G++W+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 165 KIKDDNPXLKVTEIAKKAGEIWRSMYD 245
K K N ++VTEI+KK E W++M D
Sbjct: 64 KKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 114 PKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWR 233
PKR +SA+ + R +I+ +P KV ++A++ G++W+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 165 KIKDDNPXLKVTEIAKKAGEIWRSMYD 245
K K N ++VTEI+KK E W++M D
Sbjct: 64 KKKYPNENVQVTEISKKCSEKWKTMVD 90
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 114 PKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYD--KSEWXXXXXXXXXQ 287
P+RP+ Y+ + K++ +NP ++ +I K G+ W + D KS +
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKAD 85
Query: 288 YIVDLESFNAN 320
Y ++ F N
Sbjct: 86 YEKQMKHFQGN 96
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 102 MTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
MT K + S Y+L+ R +I +NP E++K G W+ + ++ +
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQK 1495
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 102 MTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
MT K + S Y+L+ R +I +NP E++K G W+ + ++ +
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQK 1495
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 102 MTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
MT K + S Y+L+ R +I +NP E++K G W+ + ++ +
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQK 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,051,991
Number of Sequences: 27780
Number of extensions: 180954
Number of successful extensions: 546
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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