Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L14
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.84 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   4.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.9  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 43  LSNKNNTLLSYKNTYLTDLK*QINRKDQCQRIYYG*TALDQ 165
           + N NN   +Y N    +     N  + C+++YY    ++Q
Sbjct: 323 IHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQ 363


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 13  VFGTHFALSRLSNKNNTLLSYKNTYLTDLK 102
           +   + +LS   N NN   +Y N Y T+ K
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNNNYNTNYK 110


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 141 LWLNSARSKIKDDNPXLKV 197
           +W  + R+K K  NP L V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +1

Query: 46  SNKNNTLLSYKNTYLTDLK*QINRKDQCQRIYYG*TALDQ 165
           S +   + S  N Y++++    N  +  +++YY    ++Q
Sbjct: 76  SKERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQ 115


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 55   FCY*GGRARNAYQTPL 8
            +CY GG AR AY+  L
Sbjct: 954  WCYYGGDARPAYRRRL 969


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +1

Query: 46  SNKNNTLLSYKNTYLTDLK*QINRKDQCQRIYYG*TALDQ 165
           S +   + S  N Y++++    N  +  +++YY    ++Q
Sbjct: 314 SKERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQ 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,481
Number of Sequences: 438
Number of extensions: 2470
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)