Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_L14
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 47 1e-05
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 46 2e-05
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 45 5e-05
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 43 2e-04
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 43 2e-04
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 42 3e-04
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 6e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 41 8e-04
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 39 0.003
At3g28730.1 68416.m03587 structure-specific recognition protein ... 38 0.006
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 34 0.072
At1g65090.1 68414.m07379 expressed protein 34 0.095
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 29 2.0
At3g07040.1 68416.m00836 disease resistance protein RPM1 (CC-NBS... 27 8.2
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/48 (41%), Positives = 34/48 (70%)
Frame = +3
Query: 111 KPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
KPK+P+SAYL++ N R+ +K +N V E+AK AGE W+++ ++ +
Sbjct: 245 KPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEEKK 290
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +3
Query: 108 DKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
+KPK+P S+Y L+ AR + +++P + + + W + ++ +
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEK 418
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 117 KRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
KRP + Y+LW +++K NP E + G W+ +
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/48 (39%), Positives = 33/48 (68%)
Frame = +3
Query: 111 KPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
KPK P+SA+L++ N R+ ++++N V E+AK GE W+++ DK +
Sbjct: 254 KPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDKKK 299
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 90 NGFKMTDKP--KRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
N K D P KRP S+Y+LW +++K +NP E + G W+S+
Sbjct: 128 NKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +3
Query: 108 DKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 254
+KPK+P S+Y L+ R K+ ++ P + W+ + ++ +
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEK 425
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSMYD--KSEWXXXX 269
K +KPKRP SA+ +++ R K +NP K V + K AG+ W+S+ D K+ +
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 270 XXXXXQYIVDLESFN 314
+Y +++++N
Sbjct: 93 EKRKVEYEKNIKAYN 107
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 269
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 270 XXXXXQYIVDLESFNAN 320
+Y ++++N N
Sbjct: 108 AKRKAEYEKQMDAYNKN 124
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 269
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 270 XXXXXQYIVDLESFNAN 320
+Y ++++N N
Sbjct: 108 AKRKAEYEKQMDAYNKN 124
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSMYD--KSEWXXXX 269
K +KPKRP SA+ +++ R K+++P K V + K GE W+S+ D K+ +
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 270 XXXXXQYIVDLESFN 314
+Y +++++N
Sbjct: 90 DKRKVEYEKNMKAYN 104
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 TDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM 239
T PK+P +A+ +L+ R + +++NP +K + EI K GE W++M
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 269
K ++PKRP SA+ ++L R + NP K V + K AG W++M DK+ +
Sbjct: 30 KDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKA 89
Query: 270 XXXXXQYIVDLESFN 314
+YI +++ +N
Sbjct: 90 ESRKTEYIKNVQQYN 104
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 105 TDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM--YDKSEWXXXXXXX 278
++KPKRP++A+ ++++ R K ++ + AK GE W+S+ +K +
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAEL 171
Query: 279 XXQYIVDLESFNAN 320
+Y LES +A+
Sbjct: 172 KAEYNKSLESNDAD 185
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 239
K + PKR MS ++ + R IK ++P + E+ K G+ WR M
Sbjct: 557 KDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 99 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 269
K ++PK+P S + ++L+ R + NP K V + + AG+ W++M +++ +
Sbjct: 29 KDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKS 88
Query: 270 XXXXXQYIVDLESFN 314
+Y V ++ +N
Sbjct: 89 QSKKTEYAVTMQQYN 103
>At1g65090.1 68414.m07379 expressed protein
Length = 284
Score = 33.9 bits (74), Expect = 0.095
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 326 RSRXEKKENPKTREESETGAKNKESETGR 412
+ + EK+E P+TR E ETGA E+ TG+
Sbjct: 174 QEQPEKREAPETRREGETGATKIETSTGK 202
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 317 KWRRSRXEKKENPKTREESETGAKNKESET 406
KWR +K++N + +S G+K KE+ET
Sbjct: 712 KWREVSEKKRKNGSSHGKSIQGSKEKEAET 741
>At3g07040.1 68416.m00836 disease resistance protein RPM1
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPM1 (gi:1361985)
Length = 926
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 579 YLNLSNKSQKEKKHSFHGPEFKMINSKTLKLKY-KFKEI 466
YLNLS KE +FH K++N +TL K+ K +E+
Sbjct: 608 YLNLSKTQVKELPKNFH----KLVNLETLNTKHSKIEEL 642
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,152,940
Number of Sequences: 28952
Number of extensions: 160807
Number of successful extensions: 483
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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