Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L12
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...   113   2e-26
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    32   0.083
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    30   0.33 
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   1.3  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    28   1.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.1  

>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score =  113 bits (272), Expect = 2e-26
 Identities = 58/146 (39%), Positives = 90/146 (61%)
 Frame = +2

Query: 209 KQLLLAKGPVRLGMMRHLLLAIDCSXAMSSQDLKPSRFLCTLKLLXKFVEEFFDQNPLSQ 388
           K+LL    P++ G++RH++L +D S +M  +D    RF   +K   +FV EFF+QNP+SQ
Sbjct: 72  KRLLRDTTPLQRGIIRHMVLVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQ 131

Query: 389 LGLIXMNNXXAXKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTLXLAGRILXPLPGHA 568
           L +I + +  A +ITDL GN + HI+ ++ L +   +G  SLQN L +A   L  +  H 
Sbjct: 132 LSIIGVMDGIAHRITDLHGNPQSHIQKLKSLRD--CSGNFSLQNALEMARASLSHIASHG 189

Query: 569 SRELLVLFASLTTCDPSDINTTIXTL 646
           +RE+L++F S+ + DP DI  TI  L
Sbjct: 190 TREVLIIFGSILSSDPGDIFKTIDAL 215



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 88  DDPKEYRWETGYEKTWEAIKEDEDGLVESLVA 183
           DD + Y WE  Y+++W+ ++ED +G +  ++A
Sbjct: 32  DDNEGYTWEGEYQRSWDIVQEDAEGSLVGVIA 63


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 539 RILXPLPGHASRELLVLFASLTTCDPSDINTTIXTLK 649
           ++L  LP    RE   +  S  TCDP D + ++ TL+
Sbjct: 142 KLLVTLPQQTEREFAYMRYSAATCDPQDFSKSLFTLR 178


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 23/110 (20%), Positives = 46/110 (41%)
 Frame = +2

Query: 263 LLAIDCSXAMSSQDLKPSRFLCTLKLLXKFVEEFFDQNPLSQLGLIXMNNXXAXKITDLS 442
           ++ ID S  M + D  P+RF      +     +  + NP +  GL+ + +     ++ L+
Sbjct: 7   MILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLT 66

Query: 443 GNVRKHIKAIQGLSNTPLTGEPSLQNTLXLAGRILXPLPGHASRELLVLF 592
            +  K + A+  L   P+ G     + + +A   L        R+ +V F
Sbjct: 67  RDYGKFLSAMHDL---PVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAF 113


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 85  EDDPKEYRWETGYEKTWEAIKED 153
           + DP +  W+ GY + W A+  D
Sbjct: 252 QSDPGDLPWDRGYSENWRAVMGD 274


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 356 EEFFDQNPLSQLGL-IXMNNXXAXKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTL 526
           EE  D + LS L   I   N  +   T   G V   I  IQ    TP +  PSL+N+L
Sbjct: 55  EESDDDSLLSDLPEEIDSTNAQSNIATPSPGTVAAAISGIQPPPKTPSSDSPSLENSL 112


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 509  MALQSAECWINLVWL*CVSGHF 444
            M L+S EC+I ++   CV GHF
Sbjct: 1496 MVLRSPECFIKILKDCCVLGHF 1517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,515
Number of Sequences: 5004
Number of extensions: 37026
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)