Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L12
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083...   103   2e-22
05_05_0261 + 23663639-23664805                                         30   1.4  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   7.4  

>04_04_0464 -
           25405629-25405665,25406644-25406710,25408112-25408373,
           25408989-25409198,25409818-25410006,25410087-25410548,
           25410889-25410936,25411972-25412301
          Length = 534

 Score =  103 bits (246), Expect = 2e-22
 Identities = 50/123 (40%), Positives = 71/123 (57%)
 Frame = +2

Query: 281 SXAMSSQDLKPSRFLCTLKLLXKFVEEFFDQNPLSQLGLIXMNNXXAXKITDLSGNVRKH 460
           S A S  D +PSR     K    F+ EFFDQNPLS +G++ M +  + ++T++ G+    
Sbjct: 125 SMAASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTEIGGSPESQ 184

Query: 461 IKAIQGLSNTPLTGEPSLQNTLXLAGRILXPLPGHASRELLVLFASLTTCDPSDINTTIX 640
           IKA+ G      +GEPSLQN L L    L  +P +  +E+L L+++L TCDP DI  TI 
Sbjct: 185 IKALMG--KLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGDIMETIA 242

Query: 641 TLK 649
             K
Sbjct: 243 KCK 245



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 109 WETGY--EKTWEAIKEDEDGLVESL 177
           WE  Y  +++WEA++EDE GL+  +
Sbjct: 44  WERAYADDRSWEALQEDESGLLRPI 68


>05_05_0261 + 23663639-23664805
          Length = 388

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 330 VHRNREG--FKSWELIASEQSMAKSKCLIMPSLTGPLARSSCFTCCFXGKFSH 178
           V R R G    SW L  +E+  +K   +++P   GP    +   CC    F+H
Sbjct: 20  VDRRRMGRVCHSWHLAVAERQRSKLPSILVPRADGPSFACALAGCCATHGFAH 72


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 88   DDPKEYRWETGYEKTWEA 141
            D  KEYR+E  Y+K W A
Sbjct: 2790 DVEKEYRYEISYDKAWRA 2807


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,579,649
Number of Sequences: 37544
Number of extensions: 219725
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)