Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L12
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22248| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      29   4.3  
SB_3029| Best HMM Match : VWA (HMM E-Value=3.9e-05)                    29   4.3  
SB_29865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_22248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = +2

Query: 554 LPGHASRELLVLFASLTTCDPSDINTTIXTLK 649
           +PGH SRE+LVL  SLT+CDP DI  T+ +LK
Sbjct: 51  MPGHVSREVLVLMGSLTSCDPGDITETVKSLK 82



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +1

Query: 88  DDPKEYRWETGYEKTWEAIKEDEDGLVESLVAE 186
           DD   YRW + YEKTWEAI+ED++G +++LV E
Sbjct: 8   DDESGYRWLSQYEKTWEAIREDDEGSLQTLVDE 40


>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/63 (26%), Positives = 23/63 (36%)
 Frame = -3

Query: 630 VFISLGSQVVRDAKSTSNSLDACPGRGXRIRPASXSVFCNDGSPVSGVLDKPCMALMCFR 451
           + ++  S      +S SNS    P    R  P S       GSP S  +  P  +   FR
Sbjct: 321 LIVTHASPFASPGRSPSNSPRPSPKNSPRTSPRSSPFASPTGSPTSSPVGSPAQSPSVFR 380

Query: 450 TFP 442
             P
Sbjct: 381 RIP 383


>SB_3029| Best HMM Match : VWA (HMM E-Value=3.9e-05)
          Length = 160

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 260 LLLAIDCSXAMSSQDLKPSRFLCTLKLLXKFVEE 361
           +++AID S +M ++D KP+R     ++   F+E+
Sbjct: 32  IVMAIDVSGSMLAKDFKPNRLDALKRVASTFIED 65


>SB_29865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 326 CTLKLLXKFVEEFFDQNPLSQLGLIXMNNXXAXKITDLSGNVRKHIKAI-QGLSNTPLTG 502
           C+L +  K   E FD NP S+     M N  A ++ D   N+ + +KA  + L + P   
Sbjct: 78  CSLSIYHKLTAEHFDLNPASK-----MRNHLAEEVLD--ENILRLMKAYKEHLQSKPGQD 130

Query: 503 EPSLQNTLXL 532
              L +TL L
Sbjct: 131 SMQLDSTLEL 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,593
Number of Sequences: 59808
Number of extensions: 263284
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)