Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L12
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05055.1 68414.m00506 basic transcription factor 2, 44kD subu...   120   6e-28
At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A (...    31   0.50 
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina...    28   6.2  

>At1g05055.1 68414.m00506 basic transcription factor 2, 44kD
           subunit-related contains weak similarity to
           Swiss-Prot:Q13888 TFIIH basal transcription factor
           complex p44 subunit (Basic transcription factor 2 44 kDa
           subunit, BTF2-p44, General transcription factor IIH
           polypeptide 2) [Homo sapiens]
          Length = 421

 Score =  120 bits (290), Expect = 6e-28
 Identities = 59/138 (42%), Positives = 83/138 (60%)
 Frame = +2

Query: 236 VRLGMMRHLLLAIDCSXAMSSQDLKPSRFLCTLKLLXKFVEEFFDQNPLSQLGLIXMNNX 415
           ++ G++R+L + ID S A +  D +PSR     K +  F+ EFFDQNPLSQ+GL+ + N 
Sbjct: 76  IQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNG 135

Query: 416 XAXKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTLXLAGRILXPLPGHASRELLVLFA 595
            A  +TDL G+   HIKA+ G       G+ SLQN L L    L  +P +  RE+L+L++
Sbjct: 136 VAHTLTDLGGSPETHIKALMG--KLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYS 193

Query: 596 SLTTCDPSDINTTIXTLK 649
           +L TCDP DI  TI   K
Sbjct: 194 ALCTCDPGDIMETIQKCK 211



 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 82  DEDDPKEYRWETGY--EKTWEAIKEDEDGLVESL 177
           DED      WE  Y  +++WE ++EDE GL+  +
Sbjct: 17  DEDAEGIGEWERAYVDDRSWEELQEDESGLLRPI 50


>At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A
           (RPN10) identical to multiubiquitin chain binding
           protein (MBP1) SP:P55034, GI:1165206
          Length = 386

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 24/111 (21%), Positives = 47/111 (42%)
 Frame = +2

Query: 263 LLAIDCSXAMSSQDLKPSRFLCTLKLLXKFVEEFFDQNPLSQLGLIXMNNXXAXKITDLS 442
           ++ ID S  M + D  PSR     + +          NP + +G++ M       +T  +
Sbjct: 7   MICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPT 66

Query: 443 GNVRKHIKAIQGLSNTPLTGEPSLQNTLXLAGRILXPLPGHASRELLVLFA 595
            ++ K +  + GL    + GE +L   + +A   L        R+ +++FA
Sbjct: 67  SDLGKILACMHGLD---VGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFA 114


>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1791

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 179 TRLSTNPSSSSLIASQVFS*PVSHRYSLGSSSSAI 75
           T LST+PS +SL++S+  +   S  ++LGS    I
Sbjct: 117 TELSTSPSETSLLSSKTSTTANSSSFALGSMPGLI 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,280,516
Number of Sequences: 28952
Number of extensions: 187984
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)