Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L10
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...   150   1e-37
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    29   0.44 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    28   1.4  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   3.1  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   4.1  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.2  

>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score =  150 bits (364), Expect = 1e-37
 Identities = 85/172 (49%), Positives = 108/172 (62%)
 Frame = +2

Query: 137 CRVDFINEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 316
           CR+     ++PEV+++V+VNVR I EMGAYV LLEY+NIEGM               K I
Sbjct: 6   CRM--YENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHI 63

Query: 317 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYET 496
           RVG+ E VVV+RVDKEKGYIDLSKRRVS ED+ KC ER+ K+KAV+SI+RH+AE    + 
Sbjct: 64  RVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAE----KH 119

Query: 497 SEQLEELYKKTAWYFEXKYKKKASAYDFFKQAAVDPSVLDECGLHEETKDVL 652
           +  LE +Y    W     Y+K   AYD FK A  +P  + E GL      V+
Sbjct: 120 NVPLETMYTTIGW---PLYRKYGHAYDAFKLAISNPDHVFE-GLEPPKSGVI 167


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 527 TAWYFEXKYKKKASAYDFFKQAAVDPSVLDEC 622
           T +YFE  +     A D F Q  +DP  L+EC
Sbjct: 107 TNYYFEVSHDALYGALDRFAQFFIDPLFLEEC 138


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 264 IMPSILL--YSRRWTYAPISAMDLTFTITTSSTSGYFSLI 151
           I P +++  ++  W YA +S     F I+T   +GY +L+
Sbjct: 782 INPDVIMSIFTHAWVYARVSPSQKEFMISTLKHNGYITLM 821


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 503 QLEELYKKTAWYFEXKYKKKA-SAYDF 580
           Q+EEL  KT WY+  + +K   S Y++
Sbjct: 470 QIEELDAKTPWYYHYELEKDVKSTYEY 496


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +2

Query: 329 TEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQL 508
           TEP+V ++   E+  +     R S   +    E + KAK        + +  H ETS+ +
Sbjct: 606 TEPLVGLKTASEED-LPTWYYRHSLVFVSSSNECWKKAKRAKRRYGRLMQSEHTETSDMM 664

Query: 509 EELYKKTAWY 538
           E+ Y+    Y
Sbjct: 665 EQHYRAVTQY 674


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 459 SCDM*QSSSIMKLLSNWKNFIKKQLGTLXRNIRRKPRHMTSS 584
           +C M  + +  KLL+ ++N + +QL  L    +  P  MTS+
Sbjct: 615 NCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 378 SMYPFSLSTLITTTGSVFPTRINLL-MDLIRLLESSDSKIMPSILLYSRRWTYAPISAMD 202
           SM P S S+  TTTGS +    + L   +I     S S ++P+ ++ S   T  P++   
Sbjct: 206 SMIPSS-SSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITS---TSTPVTVSS 261

Query: 201 LTFTITTSSTSGYFSLIKST 142
            + +  T S S   +   ST
Sbjct: 262 SSLSSFTPSYSTNLTTTGST 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,709
Number of Sequences: 5004
Number of extensions: 49323
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)