Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L10
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical...   200   5e-52
Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81546-8|CAB04456.1|  676|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AY313179-1|AAP79304.1|  782|Caenorhabditis elegans myotubularin-...    30   1.6  
AY313177-1|AAP79302.1|  676|Caenorhabditis elegans myotubularin-...    30   1.6  
U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical
           protein Y37E3.10 protein.
          Length = 342

 Score =  200 bits (489), Expect = 5e-52
 Identities = 95/173 (54%), Positives = 127/173 (73%)
 Frame = +2

Query: 134 RCRVDFINEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKL 313
           +CR  F   ++P+VE+ V+ NV+ IA+MGAYV L EYN+ EGM              NKL
Sbjct: 2   KCR--FYENQFPDVEETVVANVKMIADMGAYVRLSEYNDKEGMILLSELSRRRIRSVNKL 59

Query: 314 IRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYE 493
           IRVG++E VVVIRVDK+KGYIDLSKRRV  +D+ +C ER+A AK VNSILRHVAE + Y 
Sbjct: 60  IRVGRSESVVVIRVDKDKGYIDLSKRRVYQKDLKQCDERFANAKMVNSILRHVAEQVGYT 119

Query: 494 TSEQLEELYKKTAWYFEXKYKKKASAYDFFKQAAVDPSVLDECGLHEETKDVL 652
           T E+LE+LY+KTAW+F+ K K+KA++YD FK+A  +P++LDEC +  + K+ L
Sbjct: 120 TDEELEDLYQKTAWHFDRKEKRKAASYDAFKKAITEPTILDECDISADIKEKL 172


>Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical
           protein F53A2.8b protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 338 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 517
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V ELL +E  E +E++
Sbjct: 175 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 229

Query: 518 --YKKTAWYFE 544
             +++  W  E
Sbjct: 230 RGWRRLDWNSE 240


>Z81546-8|CAB04456.1|  676|Caenorhabditis elegans Hypothetical
           protein F53A2.8a protein.
          Length = 676

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 338 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 517
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V ELL +E  E +E++
Sbjct: 69  MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 123

Query: 518 --YKKTAWYFE 544
             +++  W  E
Sbjct: 124 RGWRRLDWNSE 134


>AY313179-1|AAP79304.1|  782|Caenorhabditis elegans
           myotubularin-related protein MTM-6B protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 338 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 517
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V ELL +E  E +E++
Sbjct: 175 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 229

Query: 518 --YKKTAWYFE 544
             +++  W  E
Sbjct: 230 RGWRRLDWNSE 240


>AY313177-1|AAP79302.1|  676|Caenorhabditis elegans
           myotubularin-related protein MTM-6A protein.
          Length = 676

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 338 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 517
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V ELL +E  E +E++
Sbjct: 69  MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 123

Query: 518 --YKKTAWYFE 544
             +++  W  E
Sbjct: 124 RGWRRLDWNSE 134


>U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical
           protein T19D7.1 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 456 RSCDM*QSSSIMKLLSNWKNFIK-KQLGTLXRNI 554
           R  D  +SS   KLL NWK F+K +++ +L RN+
Sbjct: 154 RKFDNSKSSCQKKLLKNWKIFLKIRKMLSLSRNV 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,002
Number of Sequences: 27780
Number of extensions: 274855
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)