Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_L10
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    26   0.28 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 355 HSDNDNRFSLSHSDQFVNG-SDTSSGKLR*QD 263
           H+D  N  SL+H DQ   G + T SGK R Q+
Sbjct: 795 HTDIGNSQSLAHQDQCCPGFTMTKSGKTRHQN 826


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/71 (19%), Positives = 34/71 (47%)
 Frame = +2

Query: 377 DLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKKTAWYFEXKYK 556
           D+ +    ++ I + TE   K   ++S++    + LHYET   +    ++  W +  + +
Sbjct: 678 DICQLLKDSQYIREQTESDDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHRAR 737

Query: 557 KKASAYDFFKQ 589
            + S ++ + Q
Sbjct: 738 SE-SEFEMYHQ 747


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 422 CTCIYLQQIHDVSISLCILFLCP 354
           C CIY+Q I+         +LCP
Sbjct: 183 CKCIYVQSINLCMAGRLFGYLCP 205


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 382 IETSCIC*RYIQVH-RTLRKSKSSKLD 459
           I  SCIC R+I  H + L  S   K D
Sbjct: 484 IHKSCICVRFIAEHTKMLEDSTKVKED 510


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 382 IETSCIC*RYIQVH-RTLRKSKSSKLD 459
           I  SCIC R+I  H + L  S   K D
Sbjct: 484 IHKSCICVRFIAEHTKMLEDSTKVKED 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,990
Number of Sequences: 438
Number of extensions: 3044
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)